DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grsm and lap3

DIOPT Version :9

Sequence 1:NP_731749.3 Gene:grsm / 41587 FlyBaseID:FBgn0040493 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001108319.1 Gene:lap3 / 562854 ZFINID:ZDB-GENE-060719-1 Length:517 Species:Danio rerio


Alignment Length:496 Identity:130/496 - (26%)
Similarity:211/496 - (42%) Gaps:121/496 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 TASRAHAITRLVKNHVLNVSEESVVL-VCERE------NLFASACAVVRAFPLYSRKTGNLLASS 266
            ||.|.|.......:.|.:.:.:.:|| |.|::      :|..:|.|..|:.   |.:...:|:.|
Zfish    11 TAIRKHNCRLFSDSTVTSSTRKGLVLGVYEQQSDSDGVSLTEAAAAFDRSL---SGRLSEMLSLS 72

  Fly   267 QPKLNLG---------------------------CGDGN-----------ANSG-RNVVNVEFVL 292
            .|.|..|                           ||..|           .::| |.:.::|..|
Zfish    73 GPPLKKGKSRIFYGLHQDFPSVVVVGLGKSDPGVCGKENWDNCKENIRAAVSAGCRQLQDLEVAL 137

  Fly   293 INKDGCIESEPLTD---------DELNCLNETTRAIRMTAR------------------------ 324
            :..|.|.:.:...:         |||    :|.:.:.:..|                        
Zfish   138 VEVDPCGDDQSAAEGAVLGLFEYDEL----KTKKKVHVKTRPHGSVDAAAWQKGVLYGDGQNLAR 198

  Fly   325 -IVDMPCNEMNVDHFIQEVE---DVGRELCITPK----VIRGEELLEQGFGGIYGVGKAAAVPPA 381
             :::.|.|.:....|...:|   .:..:..|..|    .|.||::     |....|.|.:..||.
Zfish   199 QLMEAPANHVTPTVFANTIEQKLSLFADRVIVHKRPQSWIEGEQM-----GAFLSVSKGSEEPPV 258

  Fly   382 LVVLSHEPKG----AQETIALVGKGIVYDTGGLSIKAKTGMPGMKRDCGGAAAILGTFYAAVQCG 442
            .:.|.:  ||    ||..:.||||||.:|:||:|:|..:||..|:.|.||||.:......|....
Zfish   259 FLELHY--KGSSDSAQPPLVLVGKGITFDSGGISLKPSSGMDAMRADMGGAATVCSAIVTAAALK 321

  Fly   443 FRDNLHAVFCLAENSVGPNATRPDDIHTLYSGRTVEINNTDAEGRLVLADGVCYANKDLKANIIL 507
            ...|:..:..|.||.....|.:|.|:....:|:|::|:||||||||:|||.:|||: ..|...|:
Zfish   322 IPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQIDNTDAEGRLILADALCYAH-SFKPRAII 385

  Fly   508 DMATLTGAQGVATGKYHGAILTNSE-TWEAKSLQAGRKSGDLL--APIIYCPELHFSEFA--SAI 567
            :.||||||..||.|.....:.|||: .|| :..:|...:||.:  .|:..    |:::..  ||:
Zfish   386 NAATLTGAMDVALGSAATGVFTNSDWLWE-RLHKASVVTGDRVWRMPLFQ----HYTKQVTDSAL 445

  Fly   568 ADMKNSVADRQNAQSSC-AGLFIAAHLGFDYPGIWMHVDMA 607
            ||: |:|.....:..:| |..|:...:..::   |.|:|:|
Zfish   446 ADL-NNVGKYSRSGGACTAAAFLKEFVSANH---WAHLDIA 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grsmNP_731749.3 Peptidase_M17 141..628 CDD:238247 130/496 (26%)
lap3NP_001108319.1 Peptidase_M17 32..510 CDD:238247 125/475 (26%)
PRK00913 34..511 CDD:234863 125/473 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55148
OrthoDB 1 1.010 - - D562530at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1683
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.860

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