DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grsm and S-Lap3

DIOPT Version :9

Sequence 1:NP_731749.3 Gene:grsm / 41587 FlyBaseID:FBgn0040493 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001261679.1 Gene:S-Lap3 / 326187 FlyBaseID:FBgn0045770 Length:535 Species:Drosophila melanogaster


Alignment Length:535 Identity:125/535 - (23%)
Similarity:201/535 - (37%) Gaps:159/535 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 VAALP-LKASRHNTASRAHAITRLVKNHVLNVSEESVVLVCERENLFASACAVVRAFPLYSRKTG 260
            |:|:| :.:.||.||..|...|  ||      ..:.:||                  .||.:::|
  Fly    21 VSAVPQIGSVRHVTAGCAAGDT--VK------GGKGIVL------------------GLYEKESG 59

  Fly   261 ---NLLASS-------QPKLN-LGCG---DGNANSGR--NVVNVEFVLINKDGCIES---EPLTD 306
               .|..:.       |.||: |.|.   .|....|:  |.|:.||..|    |:..   |.:..
  Fly    60 KGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNNVDSEFRSI----CVVGVGLEGIAF 120

  Fly   307 DELNCLNETTRAIRMTARI-----VDMPCNEMNVDH----------------------------- 337
            :||..|:|....:|:.|.|     ..:.|:|::||:                             
  Fly   121 NELEMLDEGMENVRIAAGIGARSLQSIGCSEVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRST 185

  Fly   338 -------------------FIQEVEDVGREL------CITPKV-----------------IRGEE 360
                               |..|.:::.|.|      |:||.:                 :|..|
  Fly   186 IPKLELHGSPDVESWTRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME 250

  Fly   361 LLE-QGFGGIYGVGKAAAVPPALVVLSH---EPKGAQETIALVGKGIVYDTGGLSIKAKTGMPGM 421
            .:| |.......:.|.:..||.|:.:::   .|:  .:.|.|||:||.:::||::::...||...
  Fly   251 WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPE--DKPILLVGQGITFNSGGINLRPCKGMDEF 313

  Fly   422 KRDCGGAAAILGTFYAAVQCGFRDNLHAVFCLAENSVGPNATRPDDIHTLYSGRTVEINNTDAEG 486
            :.|..|||.||....||.......|:.||..|.||.....:.:|.|:.||.:.:::.:.|....|
  Fly   314 RGDLTGAACILAAMRAAAALSLPINITAVIPLCENLPSGMSCKPGDVVTLLNSKSLAVRNISRTG 378

  Fly   487 RLVLADGVCYANKDLKANIILDMATLTGAQGVATGKYHGAILTNSE-TWEAKSLQ-AGRKSGDLL 549
            .:|::|.:.|.....|..:::|:.::......|.|.....|.:||. .|  |..| ||..:||.|
  Fly   379 VVVISDPMLYGQITYKPRLVVDVGSMCKGVKKAVGGGATGIWSNSHYIW--KQFQRAGSLTGDRL 441

  Fly   550 --APIIYCPELHFSEFASAIADMKNSVADRQNAQSSCAGLFIAAHLGFDYP-GIWMHVDMATPVH 611
              .|:....:...:|..|  .|:.|   |.:...|||....:...|   .| ..|.|:|.     
  Fly   442 WRFPLWRYYKDRVAEHLS--FDLLN---DGEGYASSCLAAAVLHEL---VPCSDWAHLDT----- 493

  Fly   612 CGERATGYGVSLLLT 626
                   ||..||.|
  Fly   494 -------YGTGLLST 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grsmNP_731749.3 Peptidase_M17 141..628 CDD:238247 125/535 (23%)
S-Lap3NP_001261679.1 Peptidase_M17 47..525 CDD:238247 114/501 (23%)
PRK00913 49..525 CDD:234863 114/499 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45472716
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0260
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D562530at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11963
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1683
SonicParanoid 00.000 Not matched by this tool.
65.880

Return to query results.
Submit another query.