DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grsm and lap-1

DIOPT Version :9

Sequence 1:NP_731749.3 Gene:grsm / 41587 FlyBaseID:FBgn0040493 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_498854.1 Gene:lap-1 / 176185 WormBaseID:WBGene00002249 Length:491 Species:Caenorhabditis elegans


Alignment Length:503 Identity:217/503 - (43%)
Similarity:299/503 - (59%) Gaps:39/503 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 VLIIGQLRHLNLL----KFSHLESKLSPRVTEETFLNAVACLHPAPTDKVSLYLDVATVAALPLK 203
            ::|:|:...|..:    ||..:..|.   ||:....|::....|| :.:..|:.::|.:..:|..
 Worm    20 LIIVGKKSVLKNVTFEGKFKEVAQKF---VTDGDSWNSMISRIPA-SGRHPLHYELAHLITVPDA 80

  Fly   204 ASRHNTASRAHAITRLVK--NHVLNVSEESVVLVCERENLFASACAVVRAFPLYSRKTGNLLASS 266
            :||.||.:.||:|.:.:|  |:..:......||..|..::.:...|:.|.|..:|.||..:    
 Worm    81 SSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIARTFCKFSMKTSGI---- 141

  Fly   267 QPKLNLGCGDGNANSGRNVVNVEFVLINKDGCIESEPLTDDELNCLNETTRAIRMTARIVDMPCN 331
             .:||              ||::.|      |   :.||:::...|.:.:.::|.|||::|.|.|
 Worm   142 -RELN--------------VNIDVV------C---DKLTNEDAVFLTDLSESVRETARLIDTPAN 182

  Fly   332 EMNVDHFIQEVEDVGRELCITPKVIRGEELLEQGFGGIYGVGKAAAVPPALVVLSHEPKGAQETI 396
            .:..|..:.|...||........||||||||:.||||||.||||...|||.||||||..|:.|.|
 Worm   183 ILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGSTEHI 247

  Fly   397 ALVGKGIVYDTGGLSIKAKTGMPGMKRDCGGAAAILGTFYAAVQCGFRDNLHAVFCLAENSVGPN 461
            ||||||:|||||||.||.|||||.||||.||||.:|..:.|.|:.||...|||..|:.||:|.|.
 Worm   248 ALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPI 312

  Fly   462 ATRPDDIHTLYSGRTVEINNTDAEGRLVLADGVCYANKDLKANIILDMATLTGAQGVATGKYHGA 526
            |.:||||..:.||:|||||||||||||:|||||.||.:.|||..|.|||||||||...:|:.|||
 Worm   313 ANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGA 377

  Fly   527 ILTNSETWEAKSLQAGRKSGDLLAPIIYCPELHFSEFASAIADMKNS-VADRQNAQSSCAGLFIA 590
            .:||.|..|.:.::||:.||||:||:::.|:|.|.:..|:||||||| :.......|:.|||||.
 Worm   378 AMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLFIG 442

  Fly   591 AHLGFDYPGIWMHVDMATPVHCGERATGYGVSLLLTLFGGHTDSKLLQ 638
            ||:||.....|:|:|:|.|...|:|.||||.:|..||.|.:|...:|:
 Worm   443 AHIGFGEGLRWLHLDIAAPAEVGDRGTGYGPALFSTLLGKYTSVPMLK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grsmNP_731749.3 Peptidase_M17 141..628 CDD:238247 213/491 (43%)
lap-1NP_498854.1 Peptidase_M17 35..480 CDD:238247 210/476 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167594
Domainoid 1 1.000 331 1.000 Domainoid score I609
eggNOG 1 0.900 - - E1_COG0260
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11647
Inparanoid 1 1.050 370 1.000 Inparanoid score I1231
Isobase 1 0.950 - 0 Normalized mean entropy S3211
OMA 1 1.010 - - QHG55148
OrthoDB 1 1.010 - - D259062at33208
OrthoFinder 1 1.000 - - FOG0006189
OrthoInspector 1 1.000 - - oto18732
orthoMCL 1 0.900 - - OOG6_105603
Panther 1 1.100 - - LDO PTHR11963
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1683
SonicParanoid 1 1.000 - - X3934
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

Return to query results.
Submit another query.