Protein Alignment d-cup and chp1

DIOPT Version :10

• Sequence 1: NP_650235.1
• Gene: d-cup / 41580
• FlyBaseID: FBgn0038089
• Length: 219
• Species: Drosophila melanogaster
• Sequence 2: NP_956009.1
• Gene: chp1 / 325361
• ZFINID: ZDB-GENE-030131-4086
• Length: 194
• Species: Danio rerio
• Alignment Length: 211
• Identity: 44/211 - (20%)
• Similarity: 83/211 - (39%)
• Gaps: 74/211 - (35%)

  Fly    23 VPQIARLVPFNDSEVTCILMIYYKY-SL---QNGPSARRITSSQFVNIVIGFQQLYDMDV---VD 80
            :.:|.:...|:.|::|   .:|.:: ||   :||..:|.           .||::.::.:   .|
Zfish    14 IEEIKKETGFSHSQIT---RLYSRFHSLDKGENGGLSRE-----------DFQRIPELAINPLGD 64

  Fly    81 RIV-TLIAGGRKHVTPMEFVNYM-TILMSRDME-----------------RKMEFAYMVYDKNGM 126
            ||: .....|...|   .|..:| |:...|.:|                 .|:.||:.:||
Zfish    65 RIINAFFPEGEDQV---NFRGFMRTLAHFRPVEDNEKNKDLTGEPLNSRTNKLLFAFRLYD---- 122

  Fly   127 GINREIISSSVERFFVGDDDEVLEMRLDMV-------------DFLLLKFDEDQDGYISFEEYRS 178
             ::|:   ..:.|      ||:|::...||             |..:.:.|.:.|..|||.|:..
Zfish   123 -LDRD---DKISR------DELLQVLRMMVGVNISDEQLGSIADRTIQEADTNGDMCISFNEFTK 177

  Fly   179 IV----LQQPRLLEFL 190
            ::    ::|...:.||
Zfish   178 VLEKVDVEQKMSIRFL 193

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
d-cup	NP_650235.1	FRQ1	70..182	CDD:444056	31/150 (21%)
chp1	NP_956009.1	FRQ1	27..181	CDD:444056	38/184 (21%)
		EFh	113..179	CDD:238008	19/79 (24%)