Protein Alignment d-cup and Clxn

DIOPT Version :10

• Sequence 1: NP_650235.1
• Gene: d-cup / 41580
• FlyBaseID: FBgn0038089
• Length: 219
• Species: Drosophila melanogaster
• Sequence 2: NP_001100400.1
• Gene: Clxn / 301957
• RGDID: 1594548
• Length: 212
• Species: Rattus norvegicus
• Alignment Length: 189
• Identity: 50/189 - (26%)
• Similarity: 96/189 - (50%)
• Gaps: 31/189 - (16%)

  Fly    32 FNDSEVTCILMIYY--------KYSLQNGPSARRITSSQFVNIV-IGFQQLYDMDVVDRIVTLIA 87
            ||..||.|::.::|        |..:..|     :..:.|.||: :.|....|| ::||:   ..
  Rat    20 FNKFEVKCLITLFYNLVGDVPEKPGVVTG-----LDRNVFRNILHVTFGMTDDM-IMDRV---FR 75

  Fly    88 GGRKH----VTPMEFVNYMTILMSRDMERKMEFAYMVYDKNGMG-INRE-----IISSSVERFFV 142
            |..:.    ::..|:|:.:::.:...::.||::.:.|:|.||.| |::|     :.:|.:::...
  Rat    76 GFDRDNDGCISVSEWVHGLSLFLRGTLDEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE 140

  Fly   143 GDDDEVLEMRLDMVDFLLLKFDEDQDGYISFEEYRSIVLQQPRLLEFLGPIFPSDETRL 201
            .|.||.::   |:|:..|.|.|.|.||.:||.:|.:.|.::..|||..||..|..:.::
  Rat   141 EDPDEGIK---DLVEITLKKMDHDHDGKLSFVDYETAVREETLLLEAFGPCLPDPKRQM 196

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
d-cup	NP_650235.1	FRQ1	70..182	CDD:444056	33/121 (27%)
Clxn	NP_001100400.1	FRQ1	<67..177	CDD:444056	32/116 (28%)