Protein Alignment d-cup and pbo-1

DIOPT Version :10

• Sequence 1: NP_650235.1
• Gene: d-cup / 41580
• FlyBaseID: FBgn0038089
• Length: 219
• Species: Drosophila melanogaster
• Sequence 2: NP_497601.1
• Gene: pbo-1 / 175385
• WormBaseID: WBGene00003941
• Length: 196
• Species: Caenorhabditis elegans
• Alignment Length: 176
• Identity: 35/176 - (19%)
• Similarity: 64/176 - (36%)
• Gaps: 75/176 - (42%)

  Fly    49 LQNGPSARRITSSQFVNIVIGFQQLYDMDVVDRIVTLIAGGRKHVTPMEFVNYMTILMS------ 107
            |:..|...||..:.|.          |.:|::|        ||    :.|.:::.:|..
 Worm    61 LKQNPLGDRIIDAFFA----------DAEVLER--------RK----VYFKDFVKVLSHFRPINK 103

  Fly   108 ------RDMERKMEFAYMVYDKN------------------GMGINREIISSSVERFFVGDDDEV 148
                  ...|.|:.||:.:||.|                  |:|:.::.::|..:|
 Worm   104 NKPHPWNSREAKLRFAFTMYDLNKSGTITKDEFQDILAMMIGVGVPKDQVNSIADR--------- 159

  Fly   149 LEMRLDMVDFLLLKFDEDQDGYISFEEYRSIV----LQQPRLLEFL 190
             .||         :.|.|.||:|:|:|:.:.:    ::|.....||
 Worm   160 -TMR---------EADRDGDGFITFQEFCNAMEKTDIEQKMSFRFL 195

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
d-cup	NP_650235.1	FRQ1	70..182	CDD:444056	27/145 (19%)
pbo-1	NP_497601.1	FRQ1	49..183	CDD:444056	32/162 (20%)
		EFh	115..181	CDD:238008	19/84 (23%)