Protein Alignment PolQ and POLGAMMA2

DIOPT Version :10

• Sequence 1: NP_524333.1
• Gene: PolQ / 41571
• FlyBaseID: FBgn0002905
• Length: 2059
• Species: Drosophila melanogaster
• Sequence 2: NP_001321058.1
• Gene: POLGAMMA2 / 841506
• AraportID: AT1G50840
• Length: 1051
• Species: Arabidopsis thaliana
• Alignment Length: 1312
• Identity: 251/1312 - (19%)
• Similarity: 441/1312 - (33%)
• Gaps: 430/1312 - (32%)

  Fly   864 YKCHRGMLQSLQQMASTFAGI---VTAFCNSLQWSTLALIVSQFKDRLFF--------------- 910
            :.|.|.:||  :::|||...:   .|..|...|.|     |.|....:.|
plant    42 FPCRRTLLQ--RKLASTDGNVGYCTTTVCQGFQHS-----VHQRSSSVVFNGEWELRSESNKVRM 99

  Fly   911 -------GIHRDLIDLMRIP--------------DLSQKRARALFDAGITSLVELAGADPVELEK 954
                   |...::.:..::|              :.:.:.||.|.|.|..:     |:.|
plant   100 VPKIIKVGNQTEVAETHQVPGTVSAWREEANKLRERNGQIARNLDDNGYFN-----GSVP----- 154

  Fly   955 VLYNSISFDSAKQHDHENADEAAKRNVVRNFYITGKAGMTVSEAAKLLIGEARQFVQHEIGLGTI 1019
            ::.::.|::::::.|:|             |...|....|.:...|.|||
plant   155 IISSAPSYETSQKIDYE-------------FKPRGTTRSTTATLNKELIG--------------- 191

  Fly  1020 KWTQTQAGVEIASRAIHDGGEVDLHMSLEEEQPPVKRKLSIEENGTANSQKNPRLETVVDTQRGY 1084
             .||::..|.:..:.:..|..:|::...|..|.|:   :|.:.:||||..||    ||..:
plant   192 -ITQSEPVVSLPRKGLDVGDNMDVNPKGEGIQRPL---ISDKSSGTANGNKN----TVAIS---- 244

  Fly  1085 KVDKNIANQSKMNPNLKEIDAQNKARRNSTAHMDNLNPISNDPCQNNVNVKTAQPIISNLNDIQK 1149
            ||::: ...|.:..||.:|             .|.:..:.|.....:...|......::::....
plant   245 KVERS-TEPSNVRENLGKI-------------YDKVLIVDNVQAAKDTVAKLVNQFRNHVHSCDT 295

  Fly  1150 QGSQIEKMKINPA--------TVVCSP---------------------QLANEEKPSTSQSARRK 1185
            :.|.||..:..|.        ::.|.|                     ::..|.||....|..||
plant   296 EVSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRK 360

  Fly  1186 LVNEGMAERRRVALMKIQQRTQKENQSKDQPIQASRSNQLSSPVNRTPANRWTQSENPNNEMNNS 1250
            :.:                     |.|.|..|..:...::|.
plant   361 VWH---------------------NYSFDSHIIRNHGIEISG----------------------- 381

  Fly  1251 QLPRRNPRNQSPVPNANRTASRKVSNAEEDLFMADDSFMLNT-GLAAALTAAESKIASCTEADVI 1314
                                           |.||...|... ..|..:....|..|..::..|:
plant   382 -------------------------------FHADTMHMARLWDSARRIKGGYSLEALTSDPKVL 415

  Fly  1315 PSSQPK-EPEVIGALTPHA----SRLKRSDQLRSQRIQSPSPTPQREIEIDLESKNESNGVSSME 1374
            ..:|.| |.|.:|.::...    .:||:........:..|....|||......|.:..:.:|:::
plant   416 GGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTLK 480

  Fly  1375 ISDMSMENPLMKNPLHLNASHIMSCSKVD---ETASSFSSIDIIDVCGHRNAFQAAIIEINNATR 1436
            :.: ||...|.....||:...::..:.:|   |....|..:
plant   481 LYE-SMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGEL------------------------ 520

  Fly  1437 LGFSVGLQAQAGKQKPLIGSNLL--INQVAAAENREAAARERVLFQVDDTNFISGVSFCLADNVA 1499
               .|.::|:.    .|:....|  |.:||.||.:.|.:|.|        |:.|  .:| .|  |
plant   521 ---LVKMEAEG----ILVDREYLAEIEKVAKAEQQVAGSRFR--------NWAS--KYC-PD--A 565

  Fly  1500 YYWNMQID---ERAAYQGVPTP-----LKVQELCNLMARKDLTLVMHDGKEQLKMLRKAIPQLKR 1556
            .|.|:..|   .:..:.|:...     |.|::|..:   .::..|:.:||:.....|..  :|.|
plant   566 KYMNIGSDTQLRQLFFGGISNSSHDEVLPVEKLFKV---PNIDKVIEEGKKTPTKFRNI--KLHR 625

  Fly  1557 ISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSGRGYSSYGLDTSSAILPRIRTA 1621
            ||.            .|..|.||                   :..|:.|.|.|....:..::...
plant   626 ISD------------SPLSTENF-------------------TASGWPSVGGDVLKELAGKVSAE 659

  Fly  1622 IESCVTLHILQGQTENLSRIGNGDLLKFFHDI-EMPIQLTLCQMELVGFPAQKQRLQQLYQRMVA 1685
            .:                         |..|: ::.::..:...::.....||.:...
plant   660 YD-------------------------FMDDVSDISLEEVVEDDDVETSETQKSKTDD------- 692

  Fly  1686 VMKKVETKIYEQHGSRFNLGSSQAVAKVLGLHRKAKGRVTTSRQVLEKLNSPISHLILGYR--KL 1748
               :.:|..|   |:.:       ||...|...|.......|...:..::|.||:.||..:  .:
plant   693 ---ETDTSAY---GTAY-------VAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 744

  Fly  1749 SGLLAKSIQPLMECCQADRIHGQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPFM 1813
            ||             :..|:|......|.|||:|...|||||       |...:......|..|:
plant   745 SG-------------KDGRVHCSLNINTETGRLSARRPNLQN-------QPALEKDRYKIRKAFV 789

  Fly  1814 PTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHW-----NKIEESEVTQDL 1873
             ......|:.||:.|||:|||||::..|:::|..|:..|.....|.:.     ..:|..:|..:.
plant   790 -ASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEW 853

  Fly  1874 ---------------------RNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKG 1917
                                 |...|.:.:.|.||.....|:.....|.:||:...|.::...:.
plant   854 HPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQE 918

  Fly  1918 IRDYTTRVVNFARSKGFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILK 1982
            :|.:.......|...|:|.|:.||.|......|..:  :|..:|.|:|:.:||||||:|..|:|
plant   919 VRKWQEMRKKEAIEDGYVLTLLGRSRRFPASKSRAQ--RNHIQRAAINTPVQGSAADVAMCAML- 980

  Fly  1983 MEKNIERYREKLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK--------LSV 2039
             |.:|.:..:||..     .|::.:|||:|.|.|...| :|||.:   :.:|:.        |||
plant   981 -EISINQQLKKLGW-----RLLLQIHDEVILEGPIESA-EIAKDI---VVDCMSKPFNGRNILSV 1035

  Fly  2040 PLKVKLRIGRSW 2051
            .|.|..:..::|
plant  1036 DLSVDAKCAQNW 1047

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PolQ	NP_524333.1	BRR2	216..779	CDD:440817
		DNA_pol_A_theta	1668..2053	CDD:176475	104/420 (25%)
POLGAMMA2	NP_001321058.1	PRK05755	<277..1051	CDD:235591	193/1006 (19%)
		DNA_pol_A_plastid_like	640..1049	CDD:176477	110/487 (23%)