DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PolQ and polq

DIOPT Version :10

Sequence 1:NP_524333.1 Gene:PolQ / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:NP_001184156.2 Gene:polq / 733897 XenbaseID:XB-GENE-996022 Length:2671 Species:Xenopus tropicalis


Alignment Length:2753 Identity:776/2753 - (28%)
Similarity:1170/2753 - (42%) Gaps:807/2753 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GNSTLMALEKGMQADDKENAQPGNGNIQVQSAGNEVNSEIQEINSEFFRDEFSYEVNQAHKPAEQ 74
            |:|....|..|:  .:||||....|...|:......||  ::.|........|........|...
 Frog    17 GSSLSKILFGGL--TNKENAGNRKGTPTVRGVLGPHNS--RKRNRPTSSSPGSESSTSPSSPKRA 77

  Fly    75 SVVNVSQVQQHMAVVSNQDSEDQSRSSALNDQICTQSSFEGEDAGADAVLDQPNLDENSFLCPAQ 139
            :|...::.:.|.:..|.:....:|.|..|      |:......|..|.:|..|.           
 Frog    78 TVGRQNRPRPHTSRASQRRRRSESGSDTL------QNGSVAPSAHRDFILFSPT----------- 125

  Fly   140 DEEASEQLKEDILHSHSVLAKQEFYQ-EISQVTQNLSSMSP--NQLRVSPNSSRIREAM------ 195
                         |..|:|.||:..: :.|:...::|.::|  ...|...:|||:.|::      
 Frog   126 -------------HQASILGKQKGQEPQRSRANLSVSVLTPPAGLERSLIDSSRLNESVCGSGQG 177

  Fly   196 PERPAMPLDLNTLRSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHCNLVYSAPTSA 260
            |.. |:|..|.....:::|.||.::..:|...||..||:||.|||...::| |..||||||||||
 Frog   178 PHM-AVPDALADKLMLASWGLPKTVLEKYGSLGVSQMFEWQAECLMLGQVL-EGKNLVYSAPTSA 240

  Fly   261 GKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPGGFESL 325
            |||||:|:|:||.|||..:|.|.||||:||.:||.||:|:|....|.:|:|:.|..:|.|||.||
 Frog   241 GKTLVAELLILKRVLETRRKALFILPFVSVAKEKTFYLQNLFQEVGVKVDGYMGSSSPAGGFCSL 305

  Fly   326 HVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGL--- 387
            .||:|||||||.:||:|:|:.|::.:||:||||:|::.|..|||:|||||.|:.|::::..:   
 Frog   306 DVAVCTIEKANGLVNRLIEENKIDLLGMMVVDELHMLGDSHRGYLLELLLTKVRYVTQKGAVGRK 370

  Fly   388 --------QIQVITMSATLENVQLLQSWLDAELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVA 444
                    .:|::.|||||.|:.||.:|||||||.|::|||.|.|.:|:|..:||..:..||:..
 Frog   371 AEGAGPANDVQIVGMSATLPNLGLLAAWLDAELYHTDFRPVPLLERVKIGRTVYDSNMVAVREFE 435

  Fly   445 KQKVLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRL 509
            .    |..::.|.|.:..|..||:..|.|:::|||||:|||.||..:|...:             
 Frog   436 P----LLPVKGDDDHIVSLSYETVRGGHSILIFCPSKNWCEKLADTIAREFY------------- 483

  Fly   510 RTNLNPRA----------------------IAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLT 552
              ||..||                      |.:|..||:..|.|||.|:.:.:.:..||||||||
 Frog   484 --NLFHRAQQRGDAGGSDSFVPPVALDRDGIRDVMDQLKRSPAGLDAVLGRTVPWGVAFHHAGLT 546

  Fly   553 TEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTYRQMIGRAGRMGK 617
            .:||||:|.:|:.|.::||.||||||||||||||||:||||||.|:.:..|||:||.|||||.|.
 Frog   547 FDERDIVEGAFRQGFVRVLAATSTLSSGVNLPARRVIIRSPLFNGRLLDILTYKQMAGRAGRKGV 611

  Fly   618 DTLGESILICNEINARMGRDLVVSELQPITSCL------DMDGSTHLKRALLEVISSGVANTKED 676
            ||.|||||:|.......|..|:...|:|:.|||      .:.||  :.||:||:|..|||:|.||
 Frog   612 DTEGESILVCKNPERAKGISLLQGSLKPVQSCLLRKEGAGVTGS--MIRAILEIIVGGVADTPED 674

  Fly   677 IDFFVNCTLLSAQKAFHAKEKPPDEESDANYINDALDFLVEYEFVRLQRNEERET--AVYVATRL 739
            :..:.:||||:|.......::  :||.....|...:|:|:..||:::...:...|  .||..|:|
 Frog   675 VRIYASCTLLAASMKQGGGDQ--EEEHGGGAIEACVDWLLRNEFIQILEEDRGGTKAEVYRPTKL 737

  Fly   740 GAACLASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLYVHMWEKLS 804
            |||.|:||:.|::.|.:||:||::.:.||||::||.:|||||  |..:...|||..:..:||||.
 Frog   738 GAATLSSSLSPSEALGIFADLQRAMKGFVLENDLHILYLVTP--VYEEWTTIDWYQFFCLWEKLP 800

  Fly   805 SPMKKVGELVGVRDAFLYKALRGQ--TKLD--YKQMQIHKRFYIALALEELVNETPINVVVHKYK 865
            :.||:|.||||:.:.||.:::.|:  .|.|  ::|:.||:||:.:|.|.:|::|..:..:..||.
 Frog   801 TSMKRVAELVGIEEGFLARSVNGKIVAKNDRQHRQIAIHRRFFTSLVLLDLISEVSLKELTKKYG 865

  Fly   866 CHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDLMRIPDLSQKRA 930
            |.||.||||||.|:|:||:||.|.|.|.|..:.|::|||:.||.||:.|:|.||:|:..|:.:||
 Frog   866 CSRGQLQSLQQSAATYAGMVTVFSNRLGWHNMELLLSQFQSRLTFGVQRELCDLVRVDLLNAQRA 930

  Fly   931 RALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQHDHENADEAAKRNVVRNFYITGKAGMTV 995
            |||::||:.::.|||.|..:::|..|.|::.|.|.:|...|..:.|.:|...|..:|.|:.|:|.
 Frog   931 RALYNAGLVTVAELARAHVIDVETALKNAVPFKSGRQAVDEEEEAAEERRAARCIWIPGRKGLTE 995

  Fly   996 SEAAKLLIGEARQFVQHEIGLGTIKW-------TQTQAGVEIASRAIHDGGEVDLHMS------- 1046
            .|||:|::||||:.::|::.|..|:|       :.:.:|...|:.:.|...::.|..|       
 Frog   996 REAAELIVGEARRLLKHDLALIGIEWNPESSLESSSDSGRGSANGSAHGPAQLALISSGESARVV 1060

  Fly  1047 ------------------------------------------------LEEEQPPVKRKLSIEEN 1063
                                                            .|:.|....:....:||
 Frog  1061 PDQANGPQGQQNQANGPQGQQNQANGPQGQQNQANGSRGEQNQANGSRGEQNQANGPQGQQNQEN 1125

  Fly  1064 GT---ANSQKNPRLETVVDTQRGYKVDKNIAN-------------------------QSKMN--- 1097
            |:   .|....|:.:.  :.:.|.:.::|.||                         |::.|   
 Frog  1126 GSQGEQNQANGPQGQQ--NQENGSRGEQNQANGLQGQQNRTNGSRGQQNQENGLQGQQNRTNGSQ 1188

  Fly  1098 -------------PNLKEIDAQNKARRNSTAHMDNLNPISNDPCQNNVNVKT---AQPIISNLND 1146
                         .|.:|..|..|.|....|...::.|.|..|......:.|   :||.::....
 Frog  1189 GQQNQANEPHLFDSNRREGPADPKLRPPHVAGRGHIRPQSEAPTGAEPTLATELLSQPTVAPKEP 1253

  Fly  1147 IQK----QGSQIEKMKI---NPATVVCSPQLANEEKPSTSQSARRKLVNEG-MAERRRVALMKIQ 1203
            ..|    .|..:.|::.   ||..|.......::..||:..:.|:...:|| ::|..|.|....:
 Frog  1254 PDKTMAAHGDSVPKLQTGAPNPTLVPPGGSNISDCLPSSCVTGRKVHPHEGQISEVPRRADSDPE 1318

  Fly  1204 QRTQKENQSKD--------------QPIQASRSNQ--------------------LSSPVNRTPA 1234
            |:....|||.|              |||.:...|.                    .:.|.|:.|.
 Frog  1319 QKCDSHNQSSDEVEEFPSMIMAIGEQPIVSGAVNSELRTGGTEPGGSTSPEIGLVQNQPPNKIPT 1383

  Fly  1235 NRWT-QSEN-------------------PNNEMNNSQLPRRN---PRNQSPVPNANRTASRKV-S 1275
            :..| ||.:                   ||.......:|.|.   |..::.:|.:..:|...| |
 Frog  1384 DPVTVQSVSSGSSHRARGGTASAISLLLPNGAPMRDPVPARTLGAPSAKTHIPQSTGSADLSVAS 1448

  Fly  1276 NAEEDLFMADDS----FMLNTG---------------------------LAAALT----AAESKI 1305
            ...||.|..|..    ...|||                           :|.|.|    .:|.|.
 Frog  1449 KTFEDSFQLDTQTEKLIQQNTGTRPIGPHGNVEQEAKVDGDLKMEISEHVAIAPTGKNLVSEVKN 1513

  Fly  1306 AS-----CTEADVIPSSQPKEPEVIGALTPHASRLKRSDQLRS---------------------- 1343
            .|     |::..::..||...|.|:.  ..|........||:|                      
 Frog  1514 ESPTENFCSQESMLFGSQEVPPVVVA--PEHRESSLTDTQLQSFFQAFPTQAPREQPGVSLHTPL 1576

  Fly  1344 QRIQSPSPTPQREIEIDL----------------------ESKNESNGVSSMEISDMSMENPLMK 1386
            .|.|||.|......|..|                      |.|..:.|...:...:...|.|..|
 Frog  1577 PRAQSPVPVRDHRFETSLNMSDSFLFDSFTDDPEVEPKEEEPKRPTEGAEPVAGPETLSEPPSDK 1641

  Fly  1387 NP-------LHLNASHIMSCSKVDETASSFSSIDIIDVCGHRNAFQAAIIEIN------------ 1432
            |.       |.||.:..::.|::|    ||..::::|.....::....::::|            
 Frog  1642 NTIESQEPNLALNCNRSITFSQLD----SFQIVEVLDNAEEPSSPCRNVVQVNPSNQPDRGNEEQ 1702

  Fly  1433 ----------------NATRLGFSVGLQ--------------------AQAGK-----QKPLIG- 1455
                            :.|....|.|||                    ..|||     |:.|:. 
 Frog  1703 SGDPEKVEERISLLEWSDTSFNLSPGLQDVLDQWPSPSGNVTRRTSSMKAAGKESLPHQEKLVAS 1767

  Fly  1456 -----SNL--------------------------------------LINQVAAAENR-------- 1469
                 |||                                      |:.....||::        
 Frog  1768 QRGPESNLELLENNRSFLDGSCLNSTPVALPGNKRDSGSRPGSRTDLVPPTPPAESQPGRLVGVS 1832

  Fly  1470 ---EAAARER---------VLFQVD-------------------------DTNFIS--------- 1488
               .||.|.|         :..::|                         ||:.|.         
 Frog  1833 SILSAAKRPRGESVGSATWLALEMDGDWSDPQAEGSDLGPRAFPGSECARDTSAIDEGFTLQLSQ 1897

  Fly  1489 ----------------------------------------------------------------- 1488
                                                                             
 Frog  1898 DGATAFPCSSGGFTIIDVASDQSLFRTFLREWSGQRRFSLCVACERRKQPPSSDAGIGGRFKQVR 1962

  Fly  1489 -----------------------GVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMAR 1530
                                   |::.|.....|||.::|.::..|           ::|..:|.
 Frog  1963 GPQRPKVLEDGLPIKGMDDVLLVGLAVCWGGKDAYYISLQKEQDQA-----------DICPSLAP 2016

  Fly  1531 KDL---------------------------TLVMHDGKEQLKMLRKAIPQLKRIS--AKLEDAKV 1566
            ..|                           |::|:|..||.|.|..|.    |:|  ...:|.||
 Frog  2017 PPLDQTLSVKDRLWHIQSALQQIRPGGSEPTIIMYDCIEQYKALLLAC----RVSLAGHFQDPKV 2077

  Fly  1567 ANWLLQP---DKTVNFLNMCQTFAPECTGLANLCGSGRGYSSYGLDTSSAILPRIRTAIESCV-- 1626
            |.|||.|   ::|::  ||...|.|....|.:..|.|:|..|.||..||....|.|.|||:.|  
 Frog  2078 ACWLLDPGSKERTLH--NMVTNFLPYELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVF 2140

  Fly  1627 -TLHILQGQTENLSRIGNGDLLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKV 1690
             |::.|....|      ...|...||.:|||.|..|..:||.|.....:..:.....|.|.:.::
 Frog  2141 STMNALGALLE------KEKLQDAFHRVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEI 2199

  Fly  1691 ETKIYEQHGSRFNLGSSQAVAKVLGLH--------RKAKG----------------------RVT 1725
            |...|:..|..|:|.|...:|:||.|.        .||:|                      :.:
 Frog  2200 EAVAYQLAGRSFSLTSHDDLAQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFS 2264

  Fly  1726 TSRQVLEKLNS--PISHLILGYRKLSGLLAKSIQPL-----------MECCQADRIHGQSITYTA 1777
            |::.|||||.:  |:..|||.:::::..|.|.:.||           ||     ||:..|.|:||
 Frog  2265 TAKDVLEKLKALHPLPGLILEWKRITNALTKVVFPLQREKLLNPNLGME-----RIYPISQTHTA 2324

  Fly  1778 TGRISMTEPNLQNVAKEFSIQV--------------------------------GSDV------- 1803
            |||:|.||||:|||.|:|.|::                                |..|       
 Frog  2325 TGRVSFTEPNIQNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPA 2389

  Fly  1804 -----VHISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNK 1863
                 ..:|.|..|:|. ....:|:||:.|||:|||||:|:|:.|::|:.|..|:|.:|||.|..
 Frog  2390 ERGVSFFVSMRHAFVPF-PGGLILAADYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKM 2453

  Fly  1864 IEESEVTQDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNF 1928
            |:...||..:|...||:||||:||||.:||.|.:...|.:|....|.|...|.||:.:....|..
 Frog  2454 IDPEAVTDTVRQQAKQICYGIIYGMGAKSLGEQMGIEESDAACYIDTFKSRYTGIQKFLKETVRS 2518

  Fly  1929 ARSKGFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIE----- 1988
            ....|||:||.||||||..|.....:.|:.|||||||:|:|||||||.|.|.:.::|.:|     
 Frog  2519 CTRDGFVQTILGRRRYLPAIKDSNPYAKSHAERQAVNTTVQGSAADIVKTATVNIQKRLEETFPS 2583

  Fly  1989 --------------------RYREKLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMEN 2033
                                |:|.....|   ...::.|||||::|.....|.::|:::...|||
 Frog  2584 VPKSHEHPVQAGGTGRAERLRHRPPPTRG---AFFILQLHDELLYEAAQEDAIQVAQIIKKEMEN 2645

  Fly  2034 CVKLSVPLKVKLRIGRSWGEFKE 2056
            .:||||.|:||:::|.|||:.::
 Frog  2646 AMKLSVKLRVKVKMGPSWGDLQD 2668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolQNP_524333.1 BRR2 216..779 CDD:440817 267/603 (44%)
DNA_pol_A_theta 1668..2053 CDD:176475 161/496 (32%)
polqNP_001184156.2 BRR2 197..777 CDD:440817 267/603 (44%)
Med15 <1023..>1279 CDD:312941 35/257 (14%)
DnaQ_like_exo 1984..2171 CDD:447876 58/209 (28%)
DNA_pol_A_theta 2177..2666 CDD:176475 162/497 (33%)

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