DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-theta and poln

DIOPT Version :9

Sequence 1:NP_524333.1 Gene:DNApol-theta / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:NP_001093496.1 Gene:poln / 566857 ZFINID:ZDB-GENE-100917-1 Length:1146 Species:Danio rerio


Alignment Length:1231 Identity:290/1231 - (23%)
Similarity:490/1231 - (39%) Gaps:273/1231 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   995 VSEAAKLLIGEAR-QFVQ---------HEIGLGTIKWTQTQAGVEIASRAIHDGGEVDLHMS--- 1046
            :|.||:.:|...| |:||         .:.|.|   ..|.|.| |..:..:|.|...||:::   
Zfish    14 LSAAAQRIISALRVQYVQKADRSRATWSDQGFG---MAQQQDG-EDRNVELHSGNSRDLNLNELA 74

  Fly  1047 -------LEE--------EQPPVKRKL---------SIEENGTANSQKNPRLETVVDTQRGY-KV 1086
                   ||:        ..|.::|.:         .|.::.|.:.|....|:|...|..|. :.
Zfish    75 EHSNSSELEDMAIDKFALNLPIIERFVFDHADNIITPIGQHFTPSVQGEDSLQTFCLTSMGSPQA 139

  Fly  1087 DKNIANQSKMNPNL----KEIDAQNKARRN-------STAHMDNLN---PISNDPCQNNVNVKTA 1137
            ..::..||:::...    |.|...:...::       .|..|...|   ||.|           .
Zfish   140 RADVITQSEIHGRTFRKRKWIQPASPPEQDLVGCSQPETPPMKKFNFMLPIDN-----------C 193

  Fly  1138 QPIISNLNDIQKQGSQI---EKMKINPATVVCSPQLANEEKPSTSQSARRKLVNEGMAERRRVAL 1199
            ||...      ::|..|   :|...|.     .|.|..:|...:....|...:...:...|  .:
Zfish   194 QPAFG------EEGKMIDIVDKRNNNG-----QPWLPEKENSDSVSEDRAAFIEVQLGSLR--CI 245

  Fly  1200 MKIQQRTQKENQSKDQPIQASRSNQLSSPVNRTPANRWTQS----ENPNNEMNNSQLPRRNPRNQ 1260
            ..:...|.|.........:.||:.|||.|:..:|..:..:|    |...:..|.|.....:.|.:
Zfish   246 SNVDMITSKCVLETSHYWEESRNCQLSVPMENSPDAKRCESISVFECQQDTANRSDKMMDSSREK 310

  Fly  1261 SPVPNANRTASRKVSNAEEDLFMADDSFMLNTGLAAALTAAESKIASCTEADVIPSSQPKEPEVI 1325
            ..    |.|..|.::........:||:.::...|...:..|.|...:..:..:.|.||..|   :
Zfish   311 VD----NGTERRDITKLRTSSPQSDDNTVVMPVLEGEMECAASSSRNAMQHSIQPHSQAVE---V 368

  Fly  1326 GALTPHASR----------------------------LKRSDQLRSQRIQSPSPTPQREIEI--- 1359
            .:.:.||.:                            :..|.:|..|| ::|.|..:|:..:   
Zfish   369 TSFSKHAGKWEPPGPSQKALCKKTFRNPRFPIQLFHQVNGSMRLLKQR-KAPQPMVKRQRRLLRP 432

  Fly  1360 --DLESKNESNGVSSMEISDMSMENPLMKNPLHLNASHIMSCS--KVDETAS----SFSSID--- 1413
              ..:||.........:.||.|:..       ...:|||:|.:  |.|.|.:    :||.|.   
Zfish   433 QKIFKSKRGKKQNKLTKTSDSSLSG-------SKESSHILSETDRKEDGTTTTLKGAFSLISDPR 490

  Fly  1414 --------------IIDVCGHRNAFQAAIIEINNATRLGFSVGLQAQAGKQK---PLIGSNLLIN 1461
                          |::..|...||...::..:..|:|.         .:||   |:.|..:|:.
Zfish   491 VCDTGRVSQEERECILEETGKAKAFVVTMVYQDGTTQLD---------SEQKLCPPVCGLLILLK 546

  Fly  1462 QVAAAENREAAARERVLF-QVDDTNFISGVSFCLADNVAYYWNMQ--IDERAAYQGVPTPLKVQE 1523
            ....:|.......||||: :::.|.               .|..|  ..::.||   ...:.::.
Zfish   547 SELNSEEPLERPPERVLYLRLEQTP---------------AWAQQDFTQKQDAY---AREMLLKI 593

  Fly  1524 LCNLMARKDLTLVMHDGKEQLKMLRKAIPQL---KRISAKLEDAKVANWLLQP-DKTVNFLNM-- 1582
            :|...     |.|....|:.|:.:.:....|   :.:..::.|.::|.|||.| |.:..|..:  
Zfish   594 MCGTK-----TFVCFKAKDLLRTVLRHFRDLSWTQVLGCQVMDPQIAAWLLDPADSSSCFQTLLS 653

  Fly  1583 ---CQTFAPECTGLANLCGSGRGYSSYGLDTSSAIL--PRIRTAIESCVTLHILQGQTENLS-RI 1641
               ...|.|                    .|...:|  .::...|.:...||.|.   |.|. ::
Zfish   654 KHYTHQFTP--------------------TTLQPVLEQAKVTQVISNLSLLHKLM---EELHYKL 695

  Fly  1642 GNGDLLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGS 1706
            ....|.:.:..||..:...|..||.......|:.|::..:.:.:.:|::|.:.::..|.:|.:.|
Zfish   696 RTQGLWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQKFLVSS 760

  Fly  1707 SQAVAKV----LGLH---------RKAKGRVTTSRQVLEKLNS--PISHLILGYRKLSGLLAKSI 1756
            |..:..:    |.||         :..|.:.:||...|.:|..  |:..:||.||::..:....:
Zfish   761 SAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQIHKIKTTFV 825

  Fly  1757 QPLMECCQADRIHGQ-SITYTATGRISMTEPNLQNVAKEFSIQV---------GSDVVHISCRSP 1811
            ..::.|.:...|... :.|.|.:||:|...||.|.:.| ..:|:         .||:|.:..|:.
Zfish   826 DGILSCTRKTFISSTWNQTSTVSGRLSAKHPNFQALPK-LPLQISKKQYIHGKASDIVTVHPRAM 889

  Fly  1812 FMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQ-DLFIAIAAHWNKIEESEVTQDLRN 1875
            |:|. |....|||||||:|:|:|||:|.|..||.:.:|.: |.|..:||.|..:.|..|:.:.|.
Zfish   890 FIPR-EGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKGVSEDRVSLEDRE 953

  Fly  1876 STKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETITG 1940
            ..|::.|.:|||.|...|:..|..|.:||....|.|.:.|:.:..:....:...:|.|||.:|.|
Zfish   954 QAKRIVYSVVYGAGRERLSGILGVSAEEASRFQDSFLKTYREVPAFIQHTIQHCQSHGFVRSIMG 1018

  Fly  1941 RRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNSVDLVM 2005
            |||:|.:|:|....|:|||||||||..:||||||:||.|::       |...:::....:..||.
Zfish  1019 RRRFLPHIHSADWSLRNQAERQAVNFVLQGSAADLAKLAMI-------RICSQVSSDSQTARLVA 1076

  Fly  2006 HLHDELIFEVPTGKAKKIAKVLSLTMENC-------VKLSVPLKVKLRIGRSWGEFKEVSV 2059
            .:||||:|||...:..:.|.::..|||:.       |.|||||||.|..|||||...|:::
Zfish  1077 QIHDELLFEVEISQLDQFAALVKKTMESLQHIEYLNVNLSVPLKVLLSTGRSWGSMYEMNL 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-thetaNP_524333.1 BRR2 209..978 CDD:224125
DEAD 251..404 CDD:278688
HELICc 542..616 CDD:197757
PolA 1489..2055 CDD:223820 172/612 (28%)
DNA_pol_A_theta 1668..2053 CDD:176475 137/417 (33%)
polnNP_001093496.1 DnaQ_like_exo <629..716 CDD:299142 21/109 (19%)
DNA_pol_A_theta 723..1132 CDD:176475 138/417 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10133
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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