DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PolQ and polq

DIOPT Version :10

Sequence 1:NP_524333.1 Gene:PolQ / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:XP_009293682.1 Gene:polq / 566079 ZFINID:ZDB-GENE-040724-232 Length:2576 Species:Danio rerio


Alignment Length:2595 Identity:782/2595 - (30%)
Similarity:1217/2595 - (46%) Gaps:614/2595 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 QADDKENA-------------QPGNGNIQVQSAGNEVNSEIQEINSEFFRDEFSYEVNQ------ 67
            |.|..||.             .||:.::.:.   .|:...|.|:..|..:.:...::.|      
Zfish    39 QEDVSENRSIIAPKQIQSKQWMPGDSSLAMD---EEILQAIDELGPEVMKFKKIEKIQQTEPAPL 100

  Fly    68 ---------AHKPAEQSVVNVSQVQQHMAVVSNQDSEDQSRSSA--------LNDQICTQSSFEG 115
                     |..|.||:..|:|.        |:.....::|:.|        |..::....:.:.
Zfish   101 KKNCDFPKNAEIPKEQNAENISP--------SSPSEHKRTRTQAKKEGDWKDLAQKLLFSETKKI 157

  Fly   116 EDAGADAVLDQ------PNLDENSFLCPAQDEEASEQL-----------KEDILHSHSVLAKQEF 163
            |..|....|.|      |....||....::..::.::|           |:.||.|.:.:|..:.
Zfish   158 EVGGRTHDLKQNRDYSSPQKILNSMKKTSKVAKSKQKLNFREVTSPNDSKDYILFSPTHMAAAKE 222

  Fly   164 YQEISQVTQNLSSMSPNQLRVSPN-----------SSRIREAMPERPAMPLDLNTLRSISAWNLP 217
            ...:.|..::|.:.|.:.|...|.           |...:.....|||..||...|   |:|.||
Zfish   223 RSVLQQQKRSLKNQSVSVLTPPPGLDLTVLGDATLSDAAQSIHMGRPADQLDKLLL---SSWGLP 284

  Fly   218 MSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVL 282
            ..:..:|:..||..||:||.|||:..::| |..|||||||||||||||||:|:||.|||..:|.:
Zfish   285 KPVLEKYQSLGVHRMFEWQAECLTLGKVL-EGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAM 348

  Fly   283 LILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGK 347
            .||||:||.||||||:|::...||.||||:.|..:..|||.:|.||:|||||||.:||:|:|:.|
Zfish   349 FILPFVSVAREKMFYLQNVFQEAGIRVEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDK 413

  Fly   348 LETIGMVVVDEVHLISDKGRGYILELLLAKILYMSR----RNGLQ-----IQVITMSATLENVQL 403
            |:.:|.|||||:|::.|.||||:|||||.||.|:::    ||..|     :|:|.|||||.|:.|
Zfish   414 LDLLGTVVVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDL 478

  Fly   404 LQSWLDAELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETL 468
            |..||.||||.||||||.|.|.:|:||.|||..|.|||... ..:.:||   |.|.:..||.||:
Zfish   479 LARWLSAELYSTNYRPVPLMEWVKIGTNIYDGSLNLVRQFT-PALPIKG---DDDHIVSLCFETV 539

  Fly   469 LEGCSVIVFCPSKDWCENLAVQLATAI----HVQIKSETVLGQRLRTNLNPRAIAEVKQQLRDIP 529
            .:|.|.::|||||:|||.||..:....    |.:::|.:. ||.:  :||...:.:|..||:..|
Zfish   540 QDGHSALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSG-GQSI--SLNQEGLLDVLAQLKRTP 601

  Fly   530 TGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPL 594
            .|||.|:.:.:.:..||||||||.:||||:|.:|:.|.::||.||||||||||||||||:||:|:
Zfish   602 AGLDHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIRTPV 666

  Fly   595 FGGKQMSSLTYRQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCL---DMDG-S 655
            |.|..:..|||:||:|||||.|.||:|||:|:|.|.....|..|:...|:||:|||   :.:| :
Zfish   667 FNGHLLDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSLKPISSCLVKREGEGVT 731

  Fly   656 THLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPD-EESDA---NYINDALDFLV 716
            |.:.||:||:|..|||::.:|:..:..||||:|..|  |:|...| .||:|   ..|...:::|:
Zfish   732 TSMLRAILEIIVGGVASSPQDVRMYAACTLLAASIA--AEEVHQDGSESEARNKGAIEACIEWLM 794

  Fly   717 EYEFVRLQRNEERETAVYVATRLGAACLASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTP 781
            :.||:.:|:  |.:...|..|.||:|.|:||:.|.:.|.:||:||::.:.||||::||.:|.:||
Zfish   795 DNEFIHIQK--EGDVERYCPTHLGSATLSSSLSPPEALGIFADLQRAMKGFVLENDLHILYQITP 857

  Fly   782 YSVCYQLQDIDWLLYVHMWEKLSSPMKKVGELVGVRDAFLYKALRG----QTKLDYKQMQIHKRF 842
            ..|.:  ..|||..:..:||:|.|.||:|.|:||:::.||.:::.|    :|:...:||.|||||
Zfish   858 VYVDW--TTIDWYQFFCLWEQLPSAMKRVAEMVGIQEGFLARSVGGKLIAKTEKQRRQMAIHKRF 920

  Fly   843 YIALALEELVNETPINVVVHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDR 907
            :..|.|.:||:|.|:..|..||.|.||.||||||.|||:||:||.|||.|.|..|.|::|||:.|
Zfish   921 FTTLVLLDLVSEEPLGAVAKKYGCSRGQLQSLQQSASTYAGMVTVFCNRLGWHNLELLLSQFQSR 985

  Fly   908 LFFGIHRDLIDLMRIPDLSQKRARALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQHDHEN 972
            |.||:.|:|.||:||..|:.:|||.|:.:|..::.|||.||..|:||.|..:|.|.|::|...|:
Zfish   986 LSFGVQRELCDLVRISLLTAQRARTLYSSGFVTVAELARADVTEVEKALRKAIPFKSSRQAVDES 1050

  Fly   973 ADEAAKRNVVRNFYITGKAGMTVSEAAKLLIGEARQFVQHEIGLGTIKW--------TQTQAGVE 1029
            ..||.:|..:|..:::||..:|..|||:.::.||:..:|.::.|..::|        ||......
Zfish  1051 EVEAQERKSMRCIWVSGKKALTEREAAQQIVAEAQLLLQKDLALLGVEWNPACLPAKTQPDNSSN 1115

  Fly  1030 IASRAI-----HDGGEVDLHMSLEEEQPPVKRKLSIEENGTANSQKNPR-LETVVDTQRGYKVDK 1088
            ...|::     |:||: ||.:::.||      ||.:|.|...||....| ||:..:.::...||.
Zfish  1116 TEPRSMSGGTEHEGGQ-DLMLNVTEE------KLLLENNSNNNSHPPLRPLESTTNLEKTMDVDS 1173

  Fly  1089 NIAN------------QSKMNPNLKEIDAQNKA---------------RRNS---TAHMDN---- 1119
            .:::            .|.::..||.|:|::|.               ||||   |....|    
Zfish  1174 GVSSAECQPDKKCELQSSVLHKVLKSINAKDKGCDNNQTVESSSESLQRRNSCLNTCISGNDQHC 1238

  Fly  1120 LNPIS-----------NDPCQNNVNVKTAQPIISNLNDIQK--QGSQIE--KMKINPATVV---- 1165
            ::|:|           ..|....|.::.|..:.::..::.|  :..:|:  |||:|..|.:    
Zfish  1239 VSPVSKRRRMDAAGDEEGPTVTGVKMRIANGLATDRKEMPKPEELCRIDQVKMKLNKDTGLKKDS 1303

  Fly  1166 --CSPQLANEE------------KPSTS---------------QSARRKLVNE------------ 1189
              |:| |.|||            |..||               |:.:.::|.|            
Zfish  1304 RSCTP-LPNEEVTNVCVVSSGKGKKRTSKMKHLNINADINHETQTEKEEMVAEIYGKFSNRDQNE 1367

  Fly  1190 ----------------------------GMAE---------------------RRRVALMKIQQR 1205
                                        |:.|                     .|.|.|..:::.
Zfish  1368 GDLHVNTRVKNDLVCNSEKLSSPDLYTNGLEEFGDSFQLDTQTEKMLHGHDFSHRNVELNVVREN 1432

  Fly  1206 TQKENQ---SKDQPIQAS----RSNQLSSPVNRTP-------ANRWTQSENP--NNEMNNSQLPR 1254
            .| :||   :.::.::.|    :.|::|...|:.|       .|.|.....|  |..:.:|||..
Zfish  1433 KQ-DNQVDSTSEKVVKQSSFLEKENRVSKEQNKGPFESLSLHDNGWPTEAKPKYNISLTDSQLEN 1496

  Fly  1255 -RNPRNQSPVPN--ANRTASRKVSNAEEDLFMADDSF----------MLNTGLAAAL--TAAESK 1304
             .|..||.|...  ||:.|.::.:|...| .:.|:||          :.:..:..|:  .|.:..
Zfish  1497 ILNYSNQVPEEEQCANKPAEQRENNESSD-HVTDNSFNRSSSFLFDSLYDNSILDAMEEAAIDQD 1560

  Fly  1305 IASCTEADVIPSSQPKEPEVI-------------------------------------------- 1325
            .....||:|..:|....||:|                                            
Zfish  1561 NKGDQEAEVKVNSNGSSPELIPERREALPTDDQEAIQWGESSFNLSEWGDSLIIGEQYLEKISKA 1625

  Fly  1326 ------GALTP-----------------HASRLKR---------------------SDQL----- 1341
                  ||..|                 :..:::|                     |||.     
Zfish  1626 CDGPRLGAEKPSYTDDIVSELNVSQSNEYQQKVERHRLNSSSFHISPGMQDLFDKWSDQFSTVPD 1690

  Fly  1342 ---RSQRIQSP---------SPTPQREIE------------IDLESK--NESNGVSSMEISD--- 1377
               .|..:..|         |.|..:|||            :.:::|  ..|:.|...::.:   
Zfish  1691 ATAHSNSLVEPNAVVLEEAVSLTKTKEIEKEGPEVSRSEDFVTVQAKKVTPSDLVPPTQVLEPVT 1755

  Fly  1378 --MSMENPLMKNP-------------------------LHLNASHIMSCSKVDETASSFS----- 1410
              :.|....:::|                         |..|::.::.....||..:..|     
Zfish  1756 PRVKMTTSAIQSPKNVTKQRSELDPNIKSCTQRYHQPCLRTNSTSVLGAPLADEGLTRLSQCPSL 1820

  Fly  1411 ---------SIDIIDVCGHRNAFQAAIIEINNATRLGFSVGLQ---AQAGKQKPLIGSNLLINQV 1463
                     :..||||...|..|:..:.|.....|...:|..:   :.:.:.:.:||........
Zfish  1821 PASNSCSPETFSIIDVASDRRLFETFVNEWKTKERFSLAVACEKTDSTSVQPETVIGGKFKKPTT 1885

  Fly  1464 AAAENREAAARERVLFQVDDTNFISGVSFCLADNVAYYWNMQ---IDERAAYQGVPTPL------ 1519
            .....|    ::..|.:..:...:.|:|.......||:.::|   :|...:....|.||      
Zfish  1886 PMRNKR----KDGFLLKGYEDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDTLTV 1946

  Fly  1520 --KVQELCNLMARKDLTLVMHDGKEQLKMLRKAIPQLKRISAKLEDAKVANWLL---QPDKTVNF 1579
              :::::.:.:.:.....|.:|.....|:|..|.....|  ...||.|:|.|||   ..::|:: 
Zfish  1947 EERLKQIQSCLQKDSSVTVTYDFIHLYKILLLACELAVR--GTFEDPKIACWLLDSSSKERTLH- 2008

  Fly  1580 LNMCQTFAPECTGLANLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILQGQTENLSRIGNG 1644
             ||..:||.|...:.....:|:|..|.|:...::...|.|.||||.:...::......|.:.|  
Zfish  2009 -NMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRVMTQLNCLLEKDG-- 2070

  Fly  1645 DLLKFFHDIEMPIQLTLCQMEL--VGF-----PAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRF 1702
             .|..|..:|||.|..|..:||  :||     .|||..:|       |.:..:|::.|:..|..|
Zfish  2071 -FLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQ-------AKLSALESQAYQLAGHSF 2127

  Fly  1703 NLGSSQAVA---------------------KVLGLHRKAKGRV------TTSRQVLEKLN--SPI 1738
            :|.|.:.||                     |.||..|:|..|:      :|::.|||||.  .|:
Zfish  2128 SLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPL 2192

  Fly  1739 SHLILGYRKLSGLLAKSIQPLM------ECCQADRIHGQSITYTATGRISMTEPNLQNVAKEFSI 1797
            ..:||.:|:::..|.|.:.||.      ...:.||||..|.::|||||:|.||||:|||.|:|.|
Zfish  2193 PGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPISQSHTATGRVSFTEPNIQNVPKDFEI 2257

  Fly  1798 QV-------------GS--------------DVVHISCRSP-------------FMPTDESRCLL 1822
            |:             ||              .::.:|.:||             |:|. ....:|
Zfish  2258 QMPTLIEESQTSQNGGSKMWCKRTKINRLLAPLLKVSDKSPDKGMQFSVSMRHAFVPF-SGGLIL 2321

  Fly  1823 SADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNSTKQVCYGIVYG 1887
            :.|:.|||:|||||:|:|:.||.|:.|..|:|.:|||.|..::.:.|..::|...||:||||:||
Zfish  2322 AVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYG 2386

  Fly  1888 MGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETITGRRRYLENINSDV 1952
            ||.:||.|.:...|.:|....:.|...|.||:::....|......|:|:|:.||:|:|..|....
Zfish  2387 MGAKSLGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSN 2451

  Fly  1953 EHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIE---------RYREKLALGDNSVD------ 2002
            .::|:.|||||||:|:|||||||.|.|.:.:::.||         .....:.||....:      
Zfish  2452 VYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLR 2516

  Fly  2003 ---LVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRIGRSWGEFKEVSV 2059
               .::.||||||:||......::|:::...||:.|||.|.|:||:::|.|||..:::.:
Zfish  2517 GGYFILQLHDELIYEVAEEDVIQVAQIVKREMESVVKLYVKLRVKVKVGPSWGNLQDLDI 2576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolQNP_524333.1 BRR2 216..779 CDD:440817 283/583 (49%)
DNA_pol_A_theta 1668..2053 CDD:176475 159/482 (33%)
polqXP_009293682.1 BRR2 287..855 CDD:440817 281/579 (49%)
DNA_pol_A_theta 2093..2571 CDD:176475 160/485 (33%)

Return to query results.
Submit another query.