DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DNApol-theta and tam

DIOPT Version :9

Sequence 1:NP_524333.1 Gene:DNApol-theta / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:NP_476821.1 Gene:tam / 34792 FlyBaseID:FBgn0004406 Length:1145 Species:Drosophila melanogaster


Alignment Length:1200 Identity:217/1200 - (18%)
Similarity:365/1200 - (30%) Gaps:461/1200 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1147 IQKQGSQIEKMKINPATV-----VCSPQLANE-EKPSTSQSA----RRKLVNEGMAERR-RVALM 1200
            |:|..|::.:.....::|     |..||..|: :||...::.    ...||...|..|. ...|.
  Fly     6 IRKYASKVSREHYASSSVKIFRRVKPPQKVNKPKKPENVENGPTEYAENLVKVQMISRNLHAQLF 70

  Fly  1201 KIQQRTQKENQ------SKDQPIQASRSNQLSSPVN----RTPANRWTQSE-----------NPN 1244
            ....|:..|.|      .||:..:.....:.|:||:    :.||.|....|           .|.
  Fly    71 PQAPRSISEQQVASAKVYKDELRRHGVDIESSAPVSDVQLKLPALRGANIEEHFHNIAKEQVQPY 135

  Fly  1245 NEM-----NNSQLPRR-------------NPRNQSPVPNANRTASRKVSNAEEDLFMADDSFMLN 1291
            .|:     ...|||:|             :|.:.:..|         |.:..|...:.|....::
  Fly   136 EELLLPLVQCEQLPKRPKRWAFHTGWTAYDPEDGTATP---------VDHPLEKGLVFDVEVCVS 191

  Fly  1292 TGLAAALTAAES-----------------KIASCTEADVIPSSQPKEPEVIGALTPHASRLKRSD 1339
            .|.|..|..|.|                 .:......||...|:          .||.:    :|
  Fly   192 EGQAPVLATAVSTKRWYSWVSSKLTKHRLSVEKLEPLDVDTDSE----------RPHYT----TD 242

  Fly  1340 QLRSQRIQSPSPTPQREIEID---LESKNESNGVSSMEISDMSMENPLMKNPLHLNASHIMSC-- 1399
            :|.......|.......:..|   |:.:..:....:..:..||         ||:..|.:.|.  
  Fly   243 ELIPLGTTGPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMS---------LHMCVSGVTSYQR 298

  Fly  1400 ----SKVDETA--------SSFSSIDIIDV----CG-------HRNAFQAAIIEINNATRLGFSV 1441
                ||.:..|        ||.:|  :::|    ||       .||.|....:|           
  Fly   299 AMLKSKKEPAAEDLGWLEQSSLNS--LVEVHRLYCGGDTLSKEPRNIFVEGTLE----------- 350

  Fly  1442 GLQAQAGKQKPLIGSNLLINQVAAAENREAAAR-ERVLFQVDDTNFISGVSFC--LADNVAYY-- 1501
              |.:...|.       |.|.  .|.:.||..| .|||:.:....|....|..  |....||.  
  Fly   351 --QVRQSFQS-------LTNY--CASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPV 404

  Fly  1502 ---WNMQIDE-RAAYQGVPTPLK------VQELCNLMA----RKDLTLVMHD-GKEQLKM----L 1547
               |...|.| :..|:.:....|      .:|.|:|:.    |::|.|...| ..::||:    .
  Fly   405 NSNWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPK 469

  Fly  1548 RKAIPQL-----------KRISAKLE------------------------------DAKVANWLL 1571
            ||.:|.:           :|:.||.:                              .||.|:.:|
  Fly   470 RKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEIL 534

  Fly  1572 QPDKT-----VNFLNMCQTFAPECTGLANLCGSG--------RGY--------SSYGLDTSSAIL 1615
            :.|:.     .:.::.....||:   |.:||..|        :|:        .|.|:|.    |
  Fly   535 EDDEEPWSPGASEISTGMQIAPK---LLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVDR----L 592

  Fly  1616 P--------------RIRTA-IESCVTLHILQGQTENLSRIGNGDLLKFFHDIEMPIQLTLCQME 1665
            |              |:..: .||.:...:|.||.|  ..:|..:..|           .|.|  
  Fly   593 PMEQLLAHCPVPEFARLSASKAESDMAFDMLPGQVE--QHLGKREHYK-----------KLSQ-- 642

  Fly  1666 LVGFPAQKQRLQQLYQRMVAVMKKV------ETKIYEQHGSRFNLG------------------- 1705
                  ::|||:..||.......||      ..|:..::|..|.:|                   
  Fly   643 ------KQQRLETQYQGSGVWCNKVLDDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSG 701

  Fly  1706 --SSQAVAKVLGLHRKAKGRVTTSRQVLEKLNSPISHLILGYRKLSGLLAKSIQPLMECCQADRI 1768
              |.||.|:|:.:.|                       ::.|.:.:               .|||
  Fly   702 DPSCQAAARVIDIAR-----------------------MMSYWRNN---------------RDRI 728

  Fly  1769 HGQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVH-------ISC----RSPFMPTDESRCLL 1822
            .||.:.:.          :.|.:..||:.:....:.:       ::|    |....||..:....
  Fly   729 MGQMVVWL----------DSQQLPNEFTGEKCQPIAYGAICPQVVACGTLTRRAMEPTWMTASNS 783

  Fly  1823 SADFCQLEMRILAHMSQDKALLEVMKSSQDLFI--------AIAAH------WNKIEESEVT-QD 1872
            ..|....|:|.:........|:.....||:|:|        |...|      |..:..|:.. .|
  Fly   784 RPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSNGSD 848

  Fly  1873 L-----------RNSTKQVCYGIVYGMG-------MRSLAESLNCSEQEAR-------------- 1905
            :           |:..|.:.|..:||.|       :|....:.:.||.:|:              
  Fly   849 MHSITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVY 913

  Fly  1906 MISDQFH-----QAYKGIRDYTTRVVNFARSKGFVE----------TITGRRRYLENINS----- 1950
            .:.::||     :||.   .|....:...|::...|          |.:.....||.|.:     
  Fly   914 RLREEFHDELEDRAYS---SYEASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSQPR 975

  Fly  1951 ------------DVEHLKNQAER---QAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNS 2000
                        :.:....|.:|   ..:|..:|..|.|.....::.|         :..:|.: 
  Fly   976 TPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSM---------RWLMGSH- 1030

  Fly  2001 VDLVMHLHDELIFEVPTGKAKKIAKVLSLT 2030
            |...:..||||.:.|....:.|.|..:.:|
  Fly  1031 VRFCLSFHDELRYLVKEELSPKAALAMHIT 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-thetaNP_524333.1 BRR2 209..978 CDD:224125
DEAD 251..404 CDD:278688
HELICc 542..616 CDD:197757
PolA 1489..2055 CDD:223820 132/761 (17%)
DNA_pol_A_theta 1668..2053 CDD:176475 80/482 (17%)
tamNP_476821.1 DNA_pol_A 398..>440 CDD:295402 9/41 (22%)
TRH <420..539 CDD:283171 21/118 (18%)
DNA_pol_gammaA 705..1107 CDD:176478 68/416 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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