DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DNApol-theta and Helq

DIOPT Version :9

Sequence 1:NP_524333.1 Gene:DNApol-theta / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:XP_006534885.1 Gene:Helq / 191578 MGIID:2176740 Length:1141 Species:Mus musculus


Alignment Length:1095 Identity:342/1095 - (31%)
Similarity:539/1095 - (49%) Gaps:155/1095 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PGNGNIQVQSAGNEVNSEIQEINSEFFRDEFSYEVNQAHKPAEQSVVNVSQVQQHMAVVSNQDSE 95
            ||....:|:...::.|...:::..::  |.|:.....||      |.::.|....:....::|::
Mouse   119 PGTAAREVKPPSSQENDSEEDMFGDY--DSFTESSFLAH------VDDLEQRYMQLPECGDRDAD 175

  Fly    96 DQSR---SSAL--NDQICT-------QSSFEGE-----------DAGADAVLDQPNLDENSFLCP 137
            ..::   |:.|  |.::.|       ::|..|:           :.|:|...|.|:.....|..|
Mouse   176 SGTKDLCSAGLKNNLRVTTVINLTDPETSEHGQKQSHLDVPAEPEPGSDLSFDVPSSQILYFENP 240

  Fly   138 AQDEEA-------------SEQLKEDILHSH-----------SVLAKQEFYQEISQVTQNLSSMS 178
            ....||             .:...|:::.||           :|.|..|..:..|......|:|:
Mouse   241 QNSPEALGDPCTKKTNGDPQKSSHEELVSSHTEQPEPNNDFSNVRAASESSRRKSLKDHLKSTMA 305

  Fly   179 PN---QLRVSPNSSRIREAM-----------PERPAMPLDLNTLRSISAWNLPMSIQAEY-KKKG 228
            .|   |....|.|..:|||:           .|.|:.  ||...     ::||..::..| :.||
Mouse   306 GNARAQTPAFPRSKHLREALLSEEISVAKKAIESPSD--DLGPF-----YSLPSKVRDLYVQLKG 363

  Fly   229 VVDMFDWQVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVRE 293
            :..::|||..||:. |.:.|..||:||.|||.|||||:|||||:.:|.|.|.||:|||::::|:|
Mouse   364 IKKLYDWQHTCLTL-RSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQE 427

  Fly   294 KMFYMQDLLTPAGYRVEGFYG--GYTPP---GGFESLHVAICTIEKANSIVNKLMEQGKLETIGM 353
            |:..:.......|:.||.:.|  |..||   ...:||::|  |||||:|:||.|:|..:|.|:|:
Mouse   428 KISSLSSFGIELGFFVEEYAGSKGRFPPIKRREKKSLYIA--TIEKAHSLVNALIETSRLSTLGL 490

  Fly   354 VVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLDAELYITNYR 418
            |||||:|:|.:..||.|||:.|||:||.|:..    |:|.|||||.||:.||::|.||.|.:.:|
Mouse   491 VVVDELHMIGEGSRGAILEMTLAKVLYTSKTT----QIIGMSATLNNVEDLQAFLKAEYYTSQFR 551

  Fly   419 PVALKEMIKVGTVIYDHRLKLVRDVAKQKVL-------LKGLENDSDDVALLCIETLLEGCSVIV 476
            ||.|||.:||...||:...:....:...::|       ||.:  |.|.:..|..| ::...|.:|
Mouse   552 PVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKM--DPDRLVALVTE-VIPNYSCLV 613

  Fly   477 FCPSKDWCENLAVQLATAIHVQIKSETVLGQRLRTNLNPRAIAEVKQQLRDIPTG-LDGVMSKAI 540
            |||||..|||:|..|.     :..|:..|..|.:..      .||.:.||:|..| :..|:.:.:
Mouse   614 FCPSKKNCENVAEMLC-----KFLSKDYLNHREKEK------CEVIKSLRNIGNGKVCPVLKRTV 667

  Fly   541 TYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTY 605
            .:..|:||:|||:|||.::|.::..|.|.:|..||||::|||||||||::|:|......:....|
Mouse   668 PFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQY 732

  Fly   606 RQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVISSGV 670
            :||:|||||.|.||.|||||:..|.:.:...:|:...|:...|.|..:.:..::...|.:|...:
Mouse   733 KQMVGRAGRAGIDTAGESILLLQEKDKQQVLELISGPLETCCSHLVEEFTKGIQALFLSLIGLKI 797

  Fly   671 ANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDANYINDALDFLVEYEFVRLQR-----NEERE 730
            |.:..||..|::.|....|:....|||     |......|||:.|.|...  ||:     ||..|
Mouse   798 AASLGDIYQFMSGTFFGVQQKILLKEK-----SLWEITVDALEHLTEKGL--LQKDSCGDNEGLE 855

  Fly   731 TAVYVATRLGAACLASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLL 795
            ....: |:||.|....::.......|:.:|:|.....||||.||.:||.|||.:..| .:.||::
Mouse   856 CHFRI-TKLGQASFKGAIDLAYCDTLYRDLKKGLEGLVLESLLHLIYLTTPYDLAAQ-SEPDWMV 918

  Fly   796 YVHMWEKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYKQMQIHKRFYIALALEELVNETPINVV 860
            |...:.:||...:.|..|:||.::|:.|...||.........:..|.|::..|..|:.||.:..|
Mouse   919 YFKQFGQLSPTEQNVAALLGVSESFIGKKAAGQAVRKKVDKNVVNRLYLSFVLYSLLKETNVWSV 983

  Fly   861 VHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQ--WSTLALIVSQFKDRLFFGIHRDLIDLMRIP 923
            ..|:...||.:|:|...|::|:..|..||..|:  |...||:|...| :|.:.:..:||.||.:.
Mouse   984 SEKFNLPRGYIQNLLMGAASFSSCVLHFCEELEEFWVYKALLVELTK-KLTYCVKAELIPLMEVT 1047

  Fly   924 DLSQKRARALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQHDHENADEAAKRNVVRNFYIT 988
            .:.:.||:.|::||..|::.||.|:|..|.|.:            ||.:..:|.:        |.
Mouse  1048 GVLEGRAKQLYNAGYRSIMHLANANPEVLVKTI------------DHLSRRQARQ--------IV 1092

  Fly   989 GKAGMTVSEAAKLLIGEARQFVQHEIGLGTIKWTQTQAGVEIASRAIHDGGEVDL 1043
            ..|.|.:.|.|:.|.|||.:.::....|..:       |...:.||....|:|.|
Mouse  1093 SSAKMLLHEKAEALQGEAEELLRLPADLPGL-------GGPSSERAGSHAGDVTL 1140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-thetaNP_524333.1 BRR2 209..978 CDD:224125 281/789 (36%)
DEAD 251..404 CDD:278688 78/157 (50%)
HELICc 542..616 CDD:197757 36/73 (49%)
PolA 1489..2055 CDD:223820
DNA_pol_A_theta 1668..2053 CDD:176475
HelqXP_006534885.1 PHA03307 35..>327 CDD:223039 41/215 (19%)
PRK02362 349..1096 CDD:235032 282/797 (35%)
DEXHc_POLQ-like 350..552 CDD:350784 96/208 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001214
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101025
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

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