DRSC/TRiP Functional Genomics Resources

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Protein Alignment PolQ and DNApol-theta

DIOPT Version :10

Sequence 1:NP_524333.1 Gene:PolQ / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster
Sequence 2:XP_564726.4 Gene:DNApol-theta / 1269701 VectorBaseID:AGAMI1_010726 Length:1997 Species:Anopheles gambiae


Alignment Length:2151 Identity:814/2151 - (37%)
Similarity:1138/2151 - (52%) Gaps:479/2151 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SAGNEVNSEIQE---INSEFFRDEFSYEVNQAHKPAEQSVVNVSQVQQHMAVVSNQDSEDQSRSS 101
            :||..:..|.:|   .::.|...:|:.:       .||..|...:.:..|.     :||.:..|.
Mosquito   195 AAGQTMPKEKEEEGSFHTLFDHSDFTLD-------KEQQTVQYPEAEAKMT-----ESELEIFSE 247

  Fly   102 ALNDQICTQ--------------SSFEGEDAGADAVLDQPNLDENSFLCPAQDEEASEQLKEDIL 152
            .|.|:..|.              .|...:.|..|..||..|:..:..|..|....|..|      
Mosquito   248 TLFDRAITAEPAMDELLEASDFVESLRVDSADEDVALDIENVTFSQPLASASIALAQTQ------ 306

  Fly   153 HSHSVLAKQEFYQEISQVTQNLSSMSPNQLRVSPNSSRI--------------------REAMPE 197
             ||.|..::..:.|:....:  |.|:.:.||:..::|..                    ....||
Mosquito   307 -SHDVSERRSKHTEMDDFIE--SEMANSVLRMPVDASLADTVVGRDGESSGLFSGSLLNHSTKPE 368

  Fly   198 ---RP---AMPLD-LNTLRSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHCNLVYS 255
               ||   :|.|| ...||.::.|.||.::.:||.|||:|.:|.|||||||:..:|.|..||:||
Mosquito   369 TAKRPPPTSMSLDETKDLRLLANWGLPSTVTSEYAKKGIVQLFPWQVECLSRKEVLLEGKNLIYS 433

  Fly   256 APTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPG 320
            ||||||||||||.|:.|||.||..|.:|||||::|.||||.|::|||.|.|.|||||||||.|||
Mosquito   434 APTSAGKTLVSEFLLAKTVTERKLKAMLILPFVAVAREKMLYLKDLLEPGGMRVEGFYGGYHPPG 498

  Fly   321 GFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRN 385
            ||||:.:|:|||||||||||:|:||..|.|:|:|||||.|||||.||||||||||.||.:::.|.
Mosquito   499 GFESVDLAVCTIEKANSIVNRLLEQSALTTLGLVVVDEAHLISDPGRGYILELLLTKIRFVAARC 563

  Fly   386 GLQIQVITMSATLENVQLLQSWLDAELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLL 450
            ..:||::.|||||.|:.||..||:|:||.|::||:||.||:|||..||....:.:|       .|
Mosquito   564 EHRIQIVCMSATLPNIDLLARWLEADLYHTDFRPIALVEMLKVGNTIYSASGEAIR-------YL 621

  Fly   451 KG------LENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKS---ETVLG 506
            ||      :..|:|.|||||:||:|:||:||||||||||||.||:.||:.:|...|.   ...|.
Mosquito   622 KGTLHGYTVPKDADHVALLCLETILDGCAVIVFCPSKDWCEQLAISLASTLHTLRKENHPHDELR 686

  Fly   507 QRLRTNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVL 571
            :|||..|:.....||..|||:.|.|||.|:.|.:.|..|||||||||:||||||.||:.|||:::
Mosquito   687 RRLREQLDGERQEEVLLQLRNCPAGLDSVLEKTVRYGVAFHHAGLTTDERDIIEGSFRDGALRII 751

  Fly   572 VATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICNEINARMGR 636
            |||||||||||||||||::|:|.||||.||||||:||||||||.|:||||||||||.....::||
Mosquito   752 VATSTLSSGVNLPARRVIVRTPKFGGKPMSSLTYKQMIGRAGRTGRDTLGESILICTPAEEKIGR 816

  Fly   637 DLVVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQ------------ 689
            :|:.:||.|:.||||.:...|||||:||:|:||.|.|.::::.|||.||.|.:            
Mosquito   817 ELIGAELPPVRSCLDSENYAHLKRAILEIIASGSATTTQELETFVNATLYSCERDYRFEVNDQLL 881

  Fly   690 --KAFHAKEKPPDEESDANYIND----ALDFLVEYEFVR-LQRN---EERET---------AVYV 735
              ||..:|:.|..||.|.|...|    .:.||:||||:| ||::   |:..|         .|..
Mosquito   882 RPKASSSKKLPTGEEEDDNEETDPIVSCISFLLEYEFIRCLQQDIVEEDGSTTATPKSTKRTVLS 946

  Fly   736 ATRLGAACLASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLYVHMW 800
            |||||.|||::|:||.||.:||:|||::|:.|||||||||:||||||||.||.|.|||:.::.:|
Mosquito   947 ATRLGQACLSASLPPKDGFLLFSELQRARQCFVLESELHAIYLVTPYSVAYQWQQIDWMDFLDLW 1011

  Fly   801 EKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYKQMQIHKRFYIALALEELVNETPINVVVHKYK 865
            |||.|..|:|||||||:::|:.:|:||...|||:.:|||||||.||||.:||||.|:..|..::|
Mosquito  1012 EKLPSASKRVGELVGVKESFMVRAMRGAANLDYRTLQIHKRFYTALALLDLVNEVPLCTVARRFK 1076

  Fly   866 CHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDLMRIPDLSQKRA 930
            |.||:||||||::||||||||:||.||.|:.|.|:|:||::|||||:..:|:||||||.|:.:||
Mosquito  1077 CCRGLLQSLQQVSSTFAGIVTSFCASLNWTLLQLLVAQFRERLFFGVAHELLDLMRIPSLNGQRA 1141

  Fly   931 RALFDAGITSLVELAGADPVELEKVLYNSISFDSAKQHDHENADEAAKRNVVRNFYITGKAGMTV 995
            |.|.|.|||.||:||.:|.:.:|.:|::..||::.:..::||..:|.:|..:||.|:||:||:||
Mosquito  1142 RLLHDGGITGLVQLANSDRLAVETILHHRTSFEAERVRENENEYDAERRKRLRNLYLTGRAGVTV 1206

  Fly   996 SEAAKLLIGEARQFVQHEIGLGTIKWTQTQAGVEIASRAIHDGGEVDLHMSLEEEQPPVKRKLSI 1060
            .|||:|||.|||.::|.|.||....|:|                                     
Mosquito  1207 EEAARLLIQEARTYLQLEHGLANPSWSQ------------------------------------- 1234

  Fly  1061 EENGTANSQKNPRLETVVDTQRGYKVDKNIANQSKMNPNLKEIDAQNKARRNSTAHMDNLNPISN 1125
                                          |.::|.|.:..|                       
Mosquito  1235 ------------------------------ATETKPNESSSE----------------------- 1246

  Fly  1126 DPCQNNVNVKTAQPIISNLNDIQKQGSQIEKMKINPATVVCSPQLANEEKPSTSQSARRKLVNEG 1190
                                                         |.:|:.:..:|         
Mosquito  1247 ---------------------------------------------AKDEQAAQDES--------- 1257

  Fly  1191 MAERRRVALMKIQQRTQKENQSKDQPIQASRSNQLSSPVNRTPANRWTQSENPNNEMNNSQLPRR 1255
               :|.||::.:::             |.|.|..||                 |.|.:|.     
Mosquito  1258 ---KRSVAMVIVEE-------------QPSSSLLLS-----------------NGESSNC----- 1284

  Fly  1256 NPRNQSPVPNANRTASRKVSNAEEDLFMADDSFMLNTGLAAALTAAESKIASCTEADVIPSSQPK 1320
                             ..::....|.|||                                   
Mosquito  1285 -----------------AAAHFHNSLLMAD----------------------------------- 1297

  Fly  1321 EPEVIGALTPHASRLKRSDQLRSQRIQSPSPTPQREIEIDLESKNESNGVSSMEISDMSMENPLM 1385
                                                          .||....:.:||.      
Mosquito  1298 ----------------------------------------------RNGQEDRKQTDMH------ 1310

  Fly  1386 KNPLHLNASHIMSCSKVDETASSFSSIDIIDVCGHRNAFQAAIIEINNATRLGFSVGL-QAQAGK 1449
                             |:.:|| |.|.|||.|.....|:.....:.:.|.:..:.|: |.:...
Mosquito  1311 -----------------DDDSSS-SRITIIDACKDLTTFEQLRQLVTDKTAITIAFGVEQEETSV 1357

  Fly  1450 QKPLIGSNLLINQVAAAENREAAARERVLFQVDDTNFISGVSFCLAD---NVAYYWNMQIDERAA 1511
            :|..|||:|     .|.|.|.........|..||..:::|::..|.|   :..||.::|.:..| 
Mosquito  1358 KKATIGSHL-----RAVETRRTNHNASRSFTFDDNLYLAGMAIKLQDDTTSTVYYIDLQEEATA- 1416

  Fly  1512 YQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKMLRKA--IPQLKR---ISAKLEDAKVANWLL 1571
               :....||:.:..|..|:.||:.|.|.|:|||::.::  ||..:.   :.|..:|.:||.|||
Mosquito  1417 ---IDRAEKVRFVRTLFGREQLTITMLDVKDQLKIVYRSGLIPVAEGDEVLVATFQDPRVACWLL 1478

  Fly  1572 QPD-KTVNFLNMCQTFAPECTGLANLCGSGR-----GYSSYGLDTSSAILPRIRTAIESCVTLHI 1630
            |.| :|:....|.:...|... .|.|..:|:     .::.:||:..|....:.|||:|..:...:
Mosquito  1479 QTDAETLTLDAMIERHCPTLK-QAELRWTGQRWVTPKWTGHGLNHHSPFDAKQRTAVECLLVSEL 1542

  Fly  1631 LQGQTENLSRIGNGDLLKF-FHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKI 1694
            :...::.|: ..|||.|.. |...|||:||.|...|::|||..::||..|..::.|...::..:.
Mosquito  1543 MACVSQRLA-TANGDSLSICFTSREMPVQLALASAEVIGFPVDRERLGALIAQLKACRDRIAEEA 1606

  Fly  1695 YEQHGS-RFNLGSSQAVAKVL----GLHRKAKGRVTTSRQVLEKLNSPISHLILGYRKLSGLLAK 1754
            .:.:|: |.:.|||:||||.|    |..||   :..|.|||||:|.||::.|::.|||:...|.:
Mosquito  1607 RKLNGNQRLDFGSSRAVAKALRLAGGNDRK---QCRTVRQVLERLESPLAALVIAYRKIESNLTR 1668

  Fly  1755 SIQPLMECCQ--ADRIHGQSITYTATGRISMTEPNLQNVAKEFSIQV--------GSDVVH--IS 1807
            :|:||....:  ::|:||:|..:|:||||:|.|||||.|.|:|::..        |.|...  .|
Mosquito  1669 TIEPLYRIVRPGSNRVHGRSFCFTSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLFS 1733

  Fly  1808 CRSPFMPTDE--SRCLLSADFCQLEMRILAHMSQDKALLEVM-----------KSSQDLFIAIAA 1859
            |||.|..:|.  ...||||||||||:.||.|:|||..|:..:           ::..|:|.|:||
Mosquito  1734 CRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALEGGGNEAPGHTEARSDVFRALAA 1798

  Fly  1860 HWNKIE-ESEVTQDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTT 1923
            .||..| ||:|:.:|||.||.:.||::||||:|::|..|...|..||.:.:|||..|..||.|..
Mosquito  1799 RWNHYERESDVSDELRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLMEQFHATYPEIRRYIE 1863

  Fly  1924 RVVNFARSKGFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIE 1988
            |||...|..|::||:|||||:|..|.|:....:::||||||.:|||||||||.||||::|.:|:.
Mosquito  1864 RVVRLTRQLGYIETLTGRRRHLPAITSENARERSEAERQAVCTTIQGSAADILKNAIVRMRRNLR 1928

  Fly  1989 RYREKLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRIGRSWGE 2053
            :||..|.|  ..:..|:|:|||||:|||..:..||||:|..:||||.||||||:|||:.|.|||.
Mosquito  1929 KYRNVLEL--ERIRFVLHMHDELIYEVPRSQLHKIAKILKSSMENCAKLSVPLRVKLKAGPSWGT 1991

  Fly  2054 FKEVSV 2059
            .:||.:
Mosquito  1992 MQEVKI 1997

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolQNP_524333.1 BRR2 216..779 CDD:440817 338/602 (56%)
DNA_pol_A_theta 1668..2053 CDD:176475 186/415 (45%)
DNApol-thetaXP_564726.4 None

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