DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and ARP8

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_014784.1 Gene:ARP8 / 854309 SGDID:S000005667 Length:881 Species:Saccharomyces cerevisiae


Alignment Length:627 Identity:103/627 - (16%)
Similarity:183/627 - (29%) Gaps:266/627 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DVVVNQP---VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPK---------HV-RVMAGALEGDI 56
            ::.:|.|   :||..||..||.||..:..|.. .||.:..||         || .|.....:.:.
Yeast   259 EIDLNDPTATIVIHPGSNSIKIGFPKDDHPVV-VPNCVAVPKKWLDLENSEHVENVCLQREQSEE 322

  Fly    57 FVGPKAE-------------------EHRGLLSIRYPMEHGIVTDWNDMERI-WSYIYSK----- 96
            |...|:|                   .|..::|.....:..|:::.||...| |.:..||     
Yeast   323 FNNIKSEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGS 387

  Fly    97 ----------------------------EQLATFTEDHPVLLTEAPLNPRRNREKAAEF------ 127
                                        :.||....|...||..| ||......|..:|      
Yeast   388 DALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHA-LNSETLNVKPTKFNQYKVV 451

  Fly   128 ------------------FFEGINAPALFVSMQAVLSLYATGRVTGV-VLDSGDGVTHAVPIYEG 173
                              ....:...|:.:..:::.:.|..|..|.. |::.|...|....:.||
Yeast   452 LVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEG 516

  Fly   174 FAMPHSIMRVDIAGRDVTRYLKTLIRREGF---------------------NFRSTAEFEIVRSI 217
            ..:.||.:.:|..|.|:||.....:.:..|                     ||.:..:.::...:
Yeast   517 TVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQL 581

  Fly   218 KEKVCYLATNPQKEETVETEKFAYKLPD-----------GKIFEI--------GPARFRAPEV-- 261
            ..   ::..:|.:    .|||:.:||.|           .:||::        ....|:.||.  
Yeast   582 YN---FMNRSPNQ----PTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRD 639

  Fly   262 LFRPDL--------------------------------------------------LGEECEGIH 276
            ||..:|                                                  |.|....:.
Yeast   640 LFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLE 704

  Fly   277 DVLMYSIEKSDM--DLRKM--LYQNIVLSGGST------------------------LFKGFGDR 313
            ..::.||..:.:  |:.:|  .|.||::.|||:                        .|..|..:
Yeast   705 KAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKK 769

  Fly   314 LLSELK-----------KHSAKDLKIRIAAPQERLYS---------------------------- 339
            |..|:|           |...::.:|..|..:|::..                            
Yeast   770 LTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPR 834

  Fly   340 -------TWMGGSILASLDTFKKMWISKREYEEEGQKAVHRK 374
                   .|.|.|:||.:...::::|:..:::..|.:.:..|
Yeast   835 DMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYK 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 103/627 (16%)
ACTIN 9..376 CDD:214592 103/623 (17%)
ARP8NP_014784.1 NBD_sugar-kinase_HSP70_actin 42..>447 CDD:418402 40/189 (21%)
ACTIN 266..878 CDD:214592 101/620 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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