DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and ARP3

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_012599.3 Gene:ARP3 / 853528 SGDID:S000003826 Length:449 Species:Saccharomyces cerevisiae


Alignment Length:441 Identity:149/441 - (33%)
Similarity:215/441 - (48%) Gaps:84/441 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NQPVVIDNGSGVIKAGFAGEHIPKCRFP---------------------------NYIGRPKHVR 46
            |..||:|||:|:.|.||||...|...||                           :|.|......
Yeast     6 NPAVVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSAT 70

  Fly    47 VMAGALEG---------------DIFVGPKA--EEHRGLLSIRYPMEHGIVTDWNDMERIWSYIY 94
            ...||..|               |.::|.:|  .......|:.||:.||.|.:|:.|||.|....
Yeast    71 NFNGATGGLLSNNLSGKRGTEDLDFYIGNEALVASQGPSYSLSYPIRHGQVENWDHMERFWENSI 135

  Fly    95 SKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYA-------TGR 152
            .| .|.|..|||..||||.||||..|||:.||.|||..|...|::::||||:|.|       |.|
Yeast   136 FK-YLRTEPEDHFFLLTEPPLNPPENREQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTDR 199

  Fly   153 -VTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRS 216
             :||.|:||||||||.:|:.||:.:..:|..:.|||||:|.::::|:|..|   .:.........
Yeast   200 SLTGTVIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDITLFIQSLLRERG---EADTSLRTAEK 261

  Fly   217 IKEKVCYLATNPQKEET---VETEKFAYKLPDG------KIFEIGPARFRAPEVLFRPDLLGEE- 271
            ||::.||:..:..||..   .:..|||..:.:.      |:.:||..||.|||:.|.|::...: 
Yeast   262 IKQEYCYVCPDIVKEFNKFDKDPSKFAQFVVENQEKTRRKVVDIGYERFLAPEIFFNPEIASSDF 326

  Fly   272 CEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELK----------------K 320
            ...:..|:..:|:...:|:||.||.|||||||||:||.||.||..:||                |
Yeast   327 LTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNRIAQSELLSGTK 391

  Fly   321 HSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAV 371
            .:..|  :.:.:.:::..:.|.|||:||....||....:|::|||.|.:.|
Yeast   392 STGVD--VSVISHRKQRNAVWFGGSLLAQTAEFKGYCHTKKDYEEYGPEIV 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 149/441 (34%)
ACTIN 9..376 CDD:214592 149/441 (34%)
ARP3NP_012599.3 COG5277 1..445 CDD:227602 149/441 (34%)
PTZ00280 5..446 CDD:240343 149/441 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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