DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and actb1

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571106.2 Gene:actb1 / 57934 ZFINID:ZDB-GENE-000329-1 Length:375 Species:Danio rerio


Alignment Length:370 Identity:202/370 - (54%)
Similarity:273/370 - (73%) Gaps:7/370 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPME 76
            :|:|||||:.||||||:..|:..||:.:|||:|..||.|..:.|.:||.:|:..||:|:::||:|
Zfish     8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 72

  Fly    77 HGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSM 141
            |||||:|:|||:||.:.:..| |....|:||||||||||||:.||||..:..||..|.||::|::
Zfish    73 HGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 136

  Fly   142 QAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFR 206
            ||||||||:||.||:|:||||||||.||||||:|:||:|:|:|:||||:|.||..::...|::|.
Zfish   137 QAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 201

  Fly   207 STAEFEIVRSIKEKVCYLATNPQKE-----ETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPD 266
            :|||.||||.||||:||:|.:.::|     .:...|| :|:||||::..||..|||.||.||:|.
Zfish   202 TTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEK-SYELPDGQVITIGNERFRCPEALFQPS 265

  Fly   267 LLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIA 331
            .||.|..|||:....||.|.|:|:||.||.|.|||||:|::.|..||:..|:...:...:||:|.
Zfish   266 FLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKII 330

  Fly   332 APQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF 376
            ||.||.||.|:||||||||.||::|||||:||:|.|...||||.|
Zfish   331 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 201/368 (55%)
ACTIN 9..376 CDD:214592 201/368 (55%)
actb1NP_571106.2 PTZ00281 1..375 CDD:173506 201/368 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 1 1.000 - - FOG0000057
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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