DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and Arp5

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001262697.1 Gene:Arp5 / 42173 FlyBaseID:FBgn0038576 Length:648 Species:Drosophila melanogaster


Alignment Length:639 Identity:107/639 - (16%)
Similarity:190/639 - (29%) Gaps:283/639 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVM-AGALEG-----------DIFVGPKAEE 64
            :||||||...:.|::....|..||.|.:.:|:..|.. |.|.||           :|.||.....
  Fly     7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITN 71

  Fly    65 HRGLLS-IRYPMEHGIVTDWNDMERIWSYIYSK------EQLATFTEDHPVLLTEAPLNPRRNRE 122
            ...:.: ::.|.|..::|:||..|:|:.||::|      :::     |||::||||..||...|:
  Fly    72 IEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKI-----DHPIILTEALANPNFCRQ 131

  Fly   123 KAAEFFFEGINAPALFVSMQAVLSLYA--------TGRVTGVVLDSGDGVTHAVPIYEGFAMPHS 179
            :..|..||....|::...:.|   ||:        ......:::..|...||.:|:.:|......
  Fly   132 QMNELLFECYGIPSVSYGIDA---LYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEH 193

  Fly   180 IMRVDIAGRDVTRYLKTLIRRE------------------------------------------- 201
            :.|:::.|..:..||..|::.:                                           
  Fly   194 VRRLNVGGYHIITYLFRLMQMKYPVHLNAITISRMEKLVHEHCHIAVDYKEELVQWAQMDYYDEH 258

  Fly   202 ------------GFNFRSTAE--FEIVRSIKEKVCYLATNPQKEETVETEK--FAY--------- 241
                        ..|...|||  .|..|.:..::..:..|.::|:..|.|:  |.|         
  Fly   259 IMKIQLPYNAVTATNAMLTAEQKQEKRRELAHRLLDIKKNREQEKLREDEQQLFVYNKLRQLYEQ 323

  Fly   242 --------------------------------------------------------KLPDG---- 246
                                                                    |.|:|    
  Fly   324 KKLDKFERALQQQQIGTLEDLDSLIATINSRIKRAQERAQSGPRPSKQQERLNKMPKPPEGMSQA 388

  Fly   247 ----------------------------------------------------------------- 246
                                                                             
  Fly   389 DWLAELQGKREKILGRKQARQQQRSEQAKRHTHAAQERMRIISSLAKNEKRRKANGEEEDDGFGM 453

  Fly   247 -------------------------------KI------------------------FEIGPARF 256
                                           ||                        ...|....
  Fly   454 NDNDWDVYKRINRYNDDSDSDADNEKLMQFDKILNHYDANTDGNSNVPPQSAAENYQLHFGVENI 518

  Fly   257 RAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKH 321
            |.|||||:|.::|....|:.:::.:.::......::.|.:::.|:||...|||..:||:.||.:.
  Fly   519 RVPEVLFQPSMIGCSEAGLAELIAFVLKLFPAAEQQRLVEHVYLTGGCAQFKGLKERLIKELMEM 583

  Fly   322 SAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKT 375
            .....|..|....|...|.|:|..:.|...||.:...::::::|.|::.....|
  Fly   584 RPFQSKFAIYESDEPTLSAWLGACVHAGEPTFGQTLTTRQDHQEHGREFFREHT 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 107/639 (17%)
ACTIN 9..376 CDD:214592 107/639 (17%)
Arp5NP_001262697.1 COG5277 1..637 CDD:227602 106/637 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467815
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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