DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and actr3

DIOPT Version :10

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001003944.1 Gene:actr3 / 406250 ZFINID:ZDB-GENE-040428-2 Length:418 Species:Danio rerio


Alignment Length:406 Identity:135/406 - (33%)
Similarity:206/406 - (50%) Gaps:61/406 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VIDNGSGVIKAGFAGEHIPKCRFPNYI--------GRPKHVRVMAGALEGDIFVGPKAEEHRGLL 69
            |:|.|:|..|.|:||...|:...|:.|        |.....|:|.|..:.|.::|.:|.: :...
Zfish     9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRMMKGVDDLDFYIGDEAID-KPTY 72

  Fly    70 SIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINA 134
            :.::|:.||||.||:.|||....:..| .|....|||..||||.|||...|||..||..||..|.
Zfish    73 ATKWPIRHGIVEDWDLMERFMEQVIFK-YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNV 136

  Fly   135 PALFVSMQAVLSLYA--TGR------VTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVT 191
            |.|::::||||:|.|  |.|      :||.|:||||||||.:|:.||:.:...|..:.|||||:|
Zfish   137 PGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 201

  Fly   192 RYLKTLIRREGFNFRSTAEFEIVRSIKEKVCYLATNPQKE------------------ETVETEK 238
            .:.:.|:|............|..:::||:..|:..:..||                  .|:..::
Zfish   202 YFTQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFSKYDTDGSKWIKQYTGINTISKKE 266

  Fly   239 FAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEE-CEGIHDVLMYSIEKSDMDLRKMLYQNIVLSG 302
            |.        .::|..||..||:.|.|:....: .:.|.:|:...|:...:|:|:.||:||||||
Zfish   267 FT--------IDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSG 323

  Fly   303 GSTLFKGFGDRLLSELK----------------KHSAKDLKIRIAAPQERLYSTWMGGSILASLD 351
            |||:|:.||.||..:||                |...|.:.:::.....:.|:.|.|||:|||..
Zfish   324 GSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLASTP 388

  Fly   352 TFKKMWISKREYEEEG 367
            .|.::..:|::|||.|
Zfish   389 EFYQVCHTKKDYEEIG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 ASKHA_NBD_Arp1 9..375 CDD:466820 135/406 (33%)
actr3NP_001003944.1 ASKHA_NBD_Arp3-like 7..410 CDD:466822 135/406 (33%)

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