DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp1 and actl6a

DIOPT Version :10

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_989337.1 Gene:actl6a / 394962 XenbaseID:XB-GENE-491948 Length:429 Species:Xenopus tropicalis


Alignment Length:421 Identity:135/421 - (32%)
Similarity:217/421 - (51%) Gaps:65/421 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRY--- 73
            :|.|.||..::||:|||..||..||..||      |:....:|...:....::::......|   
 Frog    14 LVFDIGSYSVRAGYAGEDCPKVDFPTTIG------VVIDREDGSTPMETDGDQNKSRSPTYYIDT 72

  Fly    74 --------------PMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKA 124
                          |:::|::.||:..:.|..:.| |..:.:.|..||||::||..|.|..|||.
 Frog    73 NSLRVPRENMEAFSPLKNGMIEDWDSFQAIIDHTY-KTHIKSETNLHPVLMSEAAWNTRVKREKL 136

  Fly   125 AEFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRD 189
            .|..||..|.||.|:...|||:.:|.||.||::||||...|.|:|:::|:.:...|::..:||..
 Frog   137 TELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGSTHTTAIPVHDGYVLQQGIVKSPLAGDF 201

  Fly   190 VTRYLKTLIR------------------REGF--NFRSTAEF-EIVRSIKEKVC------YLATN 227
            :|...:.|.:                  |||.  |::...:. ::.||....:|      :.|:.
 Frog   202 ITMQCRELFQEMTVDLIPPYMIASKEAVREGATPNWKRKEKLPQVTRSWHNYMCNCVIQDFQASV 266

  Fly   228 PQKEETVETEKFA-------YKLPDGKIFEIGPARFRAPEVLFRPD----LLGEECEGIHDVLMY 281
            .|..::...|:.|       |:.|:|...:.|..|.:.||.||.|.    |.|....|:..|:..
 Frog   267 LQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTT 331

  Fly   282 SIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQ---ERLYSTWMG 343
            |:...|:|:|..||.:::::||:||.:||.|||..||.:.:...:::::.|..   ||.:|:|:|
 Frog   332 SVGMCDIDIRPGLYGSVIVAGGNTLLQGFTDRLTRELSQKTPPSMRLKLIANNTTVERRFSSWIG 396

  Fly   344 GSILASLDTFKKMWISKREYEEEGQKAVHRK 374
            |||||||.||::|||||:||||.|::.|.||
 Frog   397 GSILASLGTFQQMWISKQEYEEGGKQCVERK 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 ASKHA_NBD_Arp1 9..375 CDD:466820 135/421 (32%)
actl6aNP_989337.1 ASKHA_NBD_Arp4_ACTL6-like 8..420 CDD:466846 131/412 (32%)

Return to query results.
Submit another query.