DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and Actr3b

DIOPT Version :10

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001178789.1 Gene:Actr3b / 362298 RGDID:1565759 Length:418 Species:Rattus norvegicus


Alignment Length:408 Identity:140/408 - (34%)
Similarity:210/408 - (51%) Gaps:61/408 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHV--------RVMAGALEGDIFVGPKAEEHRG 67
            |.|:|.|:|..|.|:||...|:...|:.|...:..        ||:.|..:.|.|:|.:|.: :.
  Rat     7 PCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAID-KP 70

  Fly    68 LLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGI 132
            ..:.::|:.||||.||:.|||....:..| .|....|||..|:||.|||...|||..||..||..
  Rat    71 TYATKWPIRHGIVEDWDLMERFMEQVVFK-YLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESF 134

  Fly   133 NAPALFVSMQAVLSLYA--TGR------VTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRD 189
            |.|.|::::||||:|.|  |.|      :||:|:||||||||.:|:.||:.:...|..:.|||||
  Rat   135 NVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD 199

  Fly   190 VTRYLKTLIRREGFNFRSTAEFEIVRSIKEKVCYLATNPQKE------------------ETVET 236
            :|.:::.|:|............|..::||||.||:..:..||                  ..:..
  Rat   200 ITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRKWIKQYTGINAINQ 264

  Fly   237 EKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEE-CEGIHDVLMYSIEKSDMDLRKMLYQNIVL 300
            .||        |.::|..||..||:.|.|:....: .|.|.||:...|:...:|:|:.||:||||
  Rat   265 RKF--------IIDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNIVL 321

  Fly   301 SGGSTLFKGFGDRLLSELK----------------KHSAKDLKIRIAAPQERLYSTWMGGSILAS 349
            |||||:|:.||.||..:||                :...|.:::::.....:.|:.|.|||:|||
  Rat   322 SGGSTMFRDFGRRLQRDLKRVVDARLKLSQELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLAS 386

  Fly   350 LDTFKKMWISKREYEEEG 367
            ...|.::..:|::|||.|
  Rat   387 TPEFFQVCHTKKDYEEYG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 ASKHA_NBD_Arp1 9..375 CDD:466820 140/408 (34%)
Actr3bNP_001178789.1 ASKHA_NBD_Arp3-like 7..410 CDD:466822 140/408 (34%)

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