DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and Actl6a

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001034122.1 Gene:Actl6a / 361925 RGDID:1307747 Length:429 Species:Rattus norvegicus


Alignment Length:420 Identity:138/420 - (32%)
Similarity:219/420 - (52%) Gaps:63/420 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIG----RPKHVRVMAGALEGD--------IFVGPKA-- 62
            :|.|.||..::||:|||..||..||..||    |.....:|  .::||        .::...|  
  Rat    14 LVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMM--EIDGDKGKQGGPTYYIDTNALR 76

  Fly    63 --EEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAA 125
              .|....:|   |:::|:|.||:..:.|..:.| |..:.:....||||::|||.|.|..|||..
  Rat    77 VPRESMEAIS---PLKNGMVEDWDSFQAILDHTY-KMHVKSEASLHPVLMSEAPWNTRAKREKLT 137

  Fly   126 EFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDV 190
            |..||..:.||.|:...|||:.:|.||.||::||||...|.|:|:::|:.:...|::..:||..:
  Rat   138 ELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFI 202

  Fly   191 TRYLKTLIR------------------REG--FNFRSTAEF-EIVRSIKEKVC------YLATNP 228
            |...:.|.:                  |||  .|::...:. ::.||....:|      :.|:..
  Rat   203 TMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVL 267

  Fly   229 QKEETVETEKFA-------YKLPDGKIFEIGPARFRAPEVLFRPD----LLGEECEGIHDVLMYS 282
            |..::...|:.|       |:.|:|...:.|..|.:.||.||.|.    |.|....|:..|:..|
  Rat   268 QVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTS 332

  Fly   283 IEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQ---ERLYSTWMGG 344
            :...|:|:|..||.:::::||:||.:.|.|||..||.:.:...:::::.|..   ||.:|:|:||
  Rat   333 VGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGG 397

  Fly   345 SILASLDTFKKMWISKREYEEEGQKAVHRK 374
            ||||||.||::|||||:||||.|::.|.||
  Rat   398 SILASLGTFQQMWISKQEYEEGGKQCVERK 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 138/420 (33%)
ACTIN 9..376 CDD:214592 138/420 (33%)
Actl6aNP_001034122.1 Actin 11..429 CDD:394979 138/420 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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