DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and Actl6a

DIOPT Version :10

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001034122.1 Gene:Actl6a / 361925 RGDID:1307747 Length:429 Species:Rattus norvegicus


Alignment Length:420 Identity:138/420 - (32%)
Similarity:219/420 - (52%) Gaps:63/420 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIG----RPKHVRVMAGALEGD--------IFVGPKA-- 62
            :|.|.||..::||:|||..||..||..||    |.....:|  .::||        .::...|  
  Rat    14 LVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMM--EIDGDKGKQGGPTYYIDTNALR 76

  Fly    63 --EEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAA 125
              .|....:|   |:::|:|.||:..:.|..:.| |..:.:....||||::|||.|.|..|||..
  Rat    77 VPRESMEAIS---PLKNGMVEDWDSFQAILDHTY-KMHVKSEASLHPVLMSEAPWNTRAKREKLT 137

  Fly   126 EFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDV 190
            |..||..:.||.|:...|||:.:|.||.||::||||...|.|:|:::|:.:...|::..:||..:
  Rat   138 ELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFI 202

  Fly   191 TRYLKTLIR------------------REG--FNFRSTAEF-EIVRSIKEKVC------YLATNP 228
            |...:.|.:                  |||  .|::...:. ::.||....:|      :.|:..
  Rat   203 TMQCRELFQEMNIELIPPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVL 267

  Fly   229 QKEETVETEKFA-------YKLPDGKIFEIGPARFRAPEVLFRPD----LLGEECEGIHDVLMYS 282
            |..::...|:.|       |:.|:|...:.|..|.:.||.||.|.    |.|....|:..|:..|
  Rat   268 QVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTS 332

  Fly   283 IEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQ---ERLYSTWMGG 344
            :...|:|:|..||.:::::||:||.:.|.|||..||.:.:...:::::.|..   ||.:|:|:||
  Rat   333 VGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGG 397

  Fly   345 SILASLDTFKKMWISKREYEEEGQKAVHRK 374
            ||||||.||::|||||:||||.|::.|.||
  Rat   398 SILASLGTFQQMWISKQEYEEGGKQCVERK 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 ASKHA_NBD_Arp1 9..375 CDD:466820 138/420 (33%)
Actl6aNP_001034122.1 ASKHA_NBD_Arp4_ACTL6-like 8..420 CDD:466846 134/411 (33%)

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