DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and actc1c

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_002665778.1 Gene:actc1c / 337770 ZFINID:ZDB-GENE-030131-172 Length:377 Species:Danio rerio


Alignment Length:370 Identity:201/370 - (54%)
Similarity:271/370 - (73%) Gaps:7/370 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPME 76
            :|.|||||::||||||:..|:..||:.:|||:|..||.|..:.|.:||.:|:..||:|:::||:|
Zfish    10 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 74

  Fly    77 HGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSM 141
            |||:|:|:|||:||.:.:..| |....|:||.|||||||||:.||||..:..||..|.||::|::
Zfish    75 HGIITNWDDMEKIWHHTFYNE-LRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAI 138

  Fly   142 QAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFR 206
            ||||||||:||.||:||||||||||.||||||:|:||:|||:|:||||:|.||..::...|::|.
Zfish   139 QAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFV 203

  Fly   207 STAEFEIVRSIKEKVCYLATNPQKE-----ETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPD 266
            :|||.||||.||||:||:|.:.:.|     .:...|| :|:||||::..||..|||.||.||:|.
Zfish   204 TTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK-SYELPDGQVITIGNERFRCPETLFQPS 267

  Fly   267 LLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIA 331
            .:|.|..|||:....||.|.|:|:||.||.|.|||||:|::.|..||:..|:...:...:||:|.
Zfish   268 FIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 332

  Fly   332 APQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF 376
            ||.||.||.|:||||||||.||::|||||:||:|.|...||||.|
Zfish   333 APPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 200/368 (54%)
ACTIN 9..376 CDD:214592 200/368 (54%)
actc1cXP_002665778.1 PTZ00281 4..377 CDD:173506 200/368 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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