DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp1 and Actr10

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001009602.1 Gene:Actr10 / 299121 RGDID:1306515 Length:417 Species:Rattus norvegicus


Alignment Length:406 Identity:97/406 - (23%)
Similarity:171/406 - (42%) Gaps:87/406 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYI---GRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRY 73
            ||||.|....|.|||||..|:|..|:.|   |..|.::|                          
  Rat    16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKV-------------------------- 54

  Fly    74 PMEHGIVTDWNDMERIWSYIYSKE--------QLATFTEDHPVLLTEAPLNPRRNREKAAEFFFE 130
             :::.|.|     |.::||:  ||        .|.....|..|::.|:.|.|...||......|:
  Rat    55 -VQYNINT-----EELYSYL--KEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFK 111

  Fly   131 GINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLK 195
            ....|::.::...:::|...|..:.:|||.|...:..:|||||..:.:....:.:.|:.:.:.|:
  Rat   112 YFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELE 176

  Fly   196 TLIRRE---------GFNFRS---TAEFEIVRSIKEKVCYLATNPQKEETVETEKF--------- 239
            |.:..:         |.:..|   :....::..||.:.|:: ::.|:...::..||         
  Rat   177 TQLLEQCTVDTGAAKGQSLPSVMGSVPESVLEDIKVRTCFV-SDLQRGLQIQAAKFNIDGNNERP 240

  Fly   240 ------AYKLPDGKIFEI-GPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQN 297
                  .|.|...||..: |..|....|:||..|   .|.:.:..:::.|:.:..:|.||.|.:|
  Rat   241 SPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQD---NEEKSVATLILDSLLQCPVDTRKQLAEN 302

  Fly   298 IVLSGGSTLFKGFGDRLLSELK--------KHSAKDLKIRIAAPQERLYS-TWMGGSILASL-DT 352
            :|:.||:::..||..|||:|::        |.:......||..|..:... .|:||::..:| |.
  Rat   303 LVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKANCVAWLGGAVFGALQDI 367

  Fly   353 FKKMWISKREYEEEGQ 368
            .....|||..|.:.|:
  Rat   368 LGSRSISKEYYNQTGR 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 97/406 (24%)
ACTIN 9..376 CDD:214592 97/406 (24%)
Actr10NP_001009602.1 NBD_sugar-kinase_HSP70_actin 13..364 CDD:418402 90/385 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.