DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and act1

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_595618.1 Gene:act1 / 2540051 PomBaseID:SPBC32H8.12c Length:375 Species:Schizosaccharomyces pombe


Alignment Length:370 Identity:201/370 - (54%)
Similarity:274/370 - (74%) Gaps:7/370 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPME 76
            :|||||||:.||||||:..|:..||:.:|||:|..:|.|..:.|.:||.:|:..||:|:::||:|
pombe     8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIE 72

  Fly    77 HGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSM 141
            ||||.:|:|||:||.:.:..| |....|:||.|||||||||:.||||..:..||..||||.:|::
pombe    73 HGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAI 136

  Fly   142 QAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFR 206
            ||||||||:||.||:||||||||||.||||||:|:||:|||:|:||||:|.||..::...|:.|.
pombe   137 QAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFS 201

  Fly   207 STAEFEIVRSIKEKVCYLATNPQKE-----ETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPD 266
            :|||.||||.||||:||:|.:.::|     ::...|| :|:||||::..||..||||||.||:|.
pombe   202 TTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEK-SYELPDGQVITIGNERFRAPEALFQPS 265

  Fly   267 LLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIA 331
            .||.|..|||:....||.|.|:|:||.||.|:|:|||:|::.|..||:..|::..:...:|::|.
pombe   266 ALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIV 330

  Fly   332 APQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF 376
            ||.||.||.|:||||||||.||::|||||:||:|.|...|:||.|
pombe   331 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 200/368 (54%)
ACTIN 9..376 CDD:214592 200/368 (54%)
act1NP_595618.1 NBD_sugar-kinase_HSP70_actin 1..375 CDD:302596 200/368 (54%)
ACTIN 6..375 CDD:214592 200/368 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000057
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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