DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and arp1

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_596704.1 Gene:arp1 / 2539676 PomBaseID:SPBC1347.12 Length:379 Species:Schizosaccharomyces pombe


Alignment Length:376 Identity:197/376 - (52%)
Similarity:268/376 - (71%) Gaps:5/376 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DVVVNQPVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLL 69
            ::..|||:.||||||.|||||||:.||||.||..:||.||.|||..:::.|:|||.:|:..||||
pombe     5 EIFDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLL 69

  Fly    70 SIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINA 134
            .|:.|:|.||:.:|:|||.|||||||.:||.|..|:||:||||.||...||:||.||:|:|.:|.
pombe    70 KIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNV 134

  Fly   135 PALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIR 199
            |||..|:|.||:|||:.|.||:||:.|||:||:||||:||::|.:|.:.:|.|||||.||:..:|
pombe   135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLR 199

  Fly   200 REGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEK----FAYKLPDGKIFEIGPARFRAPE 260
            :.|....|:||.||||.||||.||:|::.:.|....||.    ..|:|||.:...:|...|.|||
pombe   200 KSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPE 264

  Fly   261 VLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKD 325
            |||.|:::|.|..|:|..|..||..||:|||..||.||||||||||.:|||:|.:|||:..|.|.
pombe   265 VLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329

  Fly   326 LKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF 376
            .:::|.|..||:::.|:||||||||.||:::.|:..||:.: |..:.|:.|
pombe   330 NQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEYKND-QNVIFRRRF 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 196/374 (52%)
ACTIN 9..376 CDD:214592 196/370 (53%)
arp1NP_596704.1 NBD_sugar-kinase_HSP70_actin 3..378 CDD:302596 196/373 (53%)
ACTIN 9..367 CDD:214592 192/357 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55293
OrthoFinder 1 1.000 - - FOG0000057
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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