DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp1 and arx-1

DIOPT Version :9

Sequence 1:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_491066.1 Gene:arx-1 / 171857 WormBaseID:WBGene00000199 Length:425 Species:Caenorhabditis elegans


Alignment Length:407 Identity:144/407 - (35%)
Similarity:215/407 - (52%) Gaps:57/407 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHV------------RVMAGALEGDIFVG-----P 60
            |||||:|..|.|:||...|:...|:.|.....|            ||.||..:.|.|:|     |
 Worm    10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSP 74

  Fly    61 KAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAA 125
            .|..:    :::||:.||||.||:.|||.|.....| .|....|||..||||.|||...|||..|
 Worm    75 AATNY----TVKYPIRHGIVEDWDLMERYWEQCIFK-YLRAEPEDHFFLLTEPPLNTPENREYTA 134

  Fly   126 EFFFEGINAPALFVSMQAVLSLYATGR--------VTGVVLDSGDGVTHAVPIYEGFAMPHSIMR 182
            |..||..|.|.|::::||||:|.|:..        :||:|:||||||||.:|:.:|:.:...|..
 Worm   135 EIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCIKH 199

  Fly   183 VDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRSIKEKVCYLATNPQKE-ETVETEKFAY-KLPD 245
            :.|||||:|.::::|:|.......:...:|:.:.||||.||:..:..|| ...:|:...: :..|
 Worm   200 IPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFVKYDTDAAKWLRTYD 264

  Fly   246 G------KIF--EIGPARFRAPEVLFRPDLLGEE-CEGIHDVLMYSIEKSDMDLRKMLYQNIVLS 301
            |      |.|  ::|..||..||:.|.|:....| ...|.|.:...|::..:|:|:.||:|||||
 Worm   265 GINSITKKPFNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLS 329

  Fly   302 GGSTLFKGFGDRLLSELKKHS----------------AKDLKIRIAAPQERLYSTWMGGSILASL 350
            ||||:||.|..:|..::|:.|                .|.:.:::.:.:.:.|:.|.|||:|||.
 Worm   330 GGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLAST 394

  Fly   351 DTFKKMWISKREYEEEG 367
            ..|.::..:|.||.|.|
 Worm   395 SEFYQVSHTKAEYMERG 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 144/407 (35%)
ACTIN 9..376 CDD:214592 144/407 (35%)
arx-1NP_491066.1 PTZ00280 3..423 CDD:240343 144/407 (35%)
COG5277 7..417 CDD:227602 144/407 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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