DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx3 and snx1b

DIOPT Version :10

Sequence 1:NP_650214.1 Gene:Snx3 / 41551 FlyBaseID:FBgn0038065 Length:167 Species:Drosophila melanogaster
Sequence 2:NP_001028907.1 Gene:snx1b / 619253 ZFINID:ZDB-GENE-050913-82 Length:524 Species:Danio rerio


Alignment Length:129 Identity:38/129 - (29%)
Similarity:64/129 - (49%) Gaps:5/129 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LEIDVVNPLTTMAAGKKRYTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKI---VV 94
            |.|.|.|| ..:..|...|..|:|..:|.||:|..|..:||||:|||..|..::...:.:   ::
Zfish   147 LNIAVTNP-EKIGDGMTAYMSYKVSTQTTLPMFANKTFTVRRRFSDFLGLYEKMSAKNSLMGCII 210

  Fly    95 PPLPGKAWKRQMPFR-GDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFLQENVIDK 157
            ||.|.|:.......: |.|......|:|:||..||.::.::..||....:..:..||:.:.:.:
Zfish   211 PPAPQKSVVGMTKVKVGKEDSSSAEFVEKRRAALERYLQRVVAHPSLLQDPDVREFLERDELPR 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx3NP_650214.1 PX_SNX3_like 32..155 CDD:132804 38/125 (30%)
snx1bNP_001028907.1 Sorting_nexin 7..86 CDD:461016
PX_domain 147..270 CDD:470617 38/123 (31%)
BAR 288..521 CDD:472257
Blue background indicates that the domain is not in the aligned region.

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