DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha55 and VMA2

DIOPT Version :10

Sequence 1:NP_476908.1 Gene:Vha55 / 41550 FlyBaseID:FBgn0005671 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_009685.3 Gene:VMA2 / 852424 SGDID:S000000331 Length:517 Species:Saccharomyces cerevisiae


Alignment Length:474 Identity:379/474 - (79%)
Similarity:416/474 - (87%) Gaps:1/474 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSGSKAVVQV 77
            ||.:.|..:|||.|.||||||||||||::||||::.|||.|.|.|||||.|||||:.|.:|:|||
Yeast    15 AVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQV 79

  Fly    78 FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSR 142
            ||||||||.|.|..||||:.||.|||||||||:|:|||:|||.||.:.|||:|||.|.||||::|
Yeast    80 FEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYAR 144

  Fly   143 IYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVLDDHTDNF 207
            |||||||.||:||||.|||||||||||||||:||||||||||||||||||: |.|.|.|.|.:||
Yeast   145 IYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVR-PTKDVHDGHEENF 208

  Fly   208 AIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKH 272
            :|||||||||:|||||||||||||||:|...||||||||||||||||||||||.||:||||.|:|
Yeast   209 SIVFAAMGVNLETARFFKQDFEENGSLERTSLFLNLANDPTIERIITPRLALTTAEYLAYQTERH 273

  Fly   273 VLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP 337
            ||.|||||||||:|||||||||||||||||:||||||||:|||||||||||||||||||||||||
Yeast   274 VLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMP 338

  Fly   338 NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQL 402
            ||||||||||||||||||||:|||||||:.||||:|||||||||||||||||||||||.||||||
Yeast   339 NDDITHPIPDLTGYITEGQIFVDRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQL 403

  Fly   403 YACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIF 467
            ||.||||||..|||||||||||:.:|.|.||||.||||.||:||.||:||||||||..|.||||:
Yeast   404 YAKYAIGKDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIY 468

  Fly   468 PKEMLKRIPASILAEFYPR 486
            |||||.||...||.|||.|
Yeast   469 PKEMLNRISPKILDEFYDR 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha55NP_476908.1 V-ATPase_V1_B 25..488 CDD:273410 373/462 (81%)
VMA2NP_009685.3 V-ATPase_V1_B 27..485 CDD:273410 370/458 (81%)

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