DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha55 and atp6v1b2

DIOPT Version :9

Sequence 1:NP_001163597.1 Gene:Vha55 / 41550 FlyBaseID:FBgn0005671 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001072182.1 Gene:atp6v1b2 / 779628 XenbaseID:XB-GENE-941731 Length:505 Species:Xenopus tropicalis


Alignment Length:483 Identity:437/483 - (90%)
Similarity:456/483 - (94%) Gaps:1/483 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSG 70
            |.||||.|||||::|||||||:|||||||||||||.||||:::|||.|.|.|||.||||||||||
 Frog    20 AAREHVQAVSRDYLSQPRLTYRTVSGVNGPLVILDNVKFPRYSEIVHLTLPDGTKRSGQVLEVSG 84

  Fly    71 SKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQ 135
            |||||||||||||||||.|.|||:|||||||||||||||||||||||||:||.:||||:|||.||
 Frog    85 SKAVVQVFEGTSGIDAKKTSCEFSGDILRTPVSEDMLGRVFNGSGKPIDRGPSVLAEDYLDIMGQ 149

  Fly   136 PINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVL 200
            ||||..||||||||||||||||.||||||||||||||||||||||||||||||||||| ..|.|:
 Frog   150 PINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKDVM 213

  Fly   201 DDHTDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFL 265
            |...|||||||||||||||||||||.||||||||:|||||||||||||||||||||||||:||||
 Frog   214 DYSEDNFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTSAEFL 278

  Fly   266 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ 330
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   279 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ 343

  Fly   331 IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDH 395
            |||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||
 Frog   344 IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDH 408

  Fly   396 SDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 460
            ||||||||||||||||||||||||||||||.|||||||||.|||||||:||.|:||||:|:||||
 Frog   409 SDVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLHKFEKNFIAQGPYDNRTVYETLDIG 473

  Fly   461 WQLLRIFPKEMLKRIPASILAEFYPRDS 488
            ||||||||||:|||||.|.|||||||||
 Frog   474 WQLLRIFPKELLKRIPQSTLAEFYPRDS 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha55NP_001163597.1 V-ATPase_V1_B 25..488 CDD:273410 420/462 (91%)
atp6v1b2NP_001072182.1 V-ATPase_V1_B 39..502 CDD:273410 422/464 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 426 1.000 Domainoid score I605
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1279
Inparanoid 1 1.050 868 1.000 Inparanoid score I414
OMA 1 1.010 - - QHG62168
OrthoDB 1 1.010 - - D276622at33208
OrthoFinder 1 1.000 - - FOG0001501
OrthoInspector 1 1.000 - - otm49318
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1629
SonicParanoid 1 1.000 - - X1067
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.010

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