DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha55 and Vha68-1

DIOPT Version :9

Sequence 1:NP_001163597.1 Gene:Vha55 / 41550 FlyBaseID:FBgn0005671 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001260426.1 Gene:Vha68-1 / 45668 FlyBaseID:FBgn0265262 Length:614 Species:Drosophila melanogaster


Alignment Length:542 Identity:125/542 - (23%)
Similarity:220/542 - (40%) Gaps:133/542 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RDFISQPRLT-YKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSGSKAVVQVFE 79
            |.|..:.|.: |..|..|:||:|..:.:......|:|::...:   ..|:::.:.|..|.:||:|
  Fly     5 RKFKDEERESEYGRVYAVSGPVVTAEAMSGSAMYELVRVGYYE---LVGEIIRLEGDMATIQVYE 66

  Fly    80 GTSGIDAKNTLCEFTGD-ILRT--PVSEDM----LGRVFNGSGKPI-DKGPPILAEDFLDIQGQP 136
            .|||:.        .|| :|||  |:|.::    :|.:|:|..:|: |.|  ::.......:|..
  Fly    67 ETSGVT--------VGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLRDIG--VMTNSIYIPKGVN 121

  Fly   137 INPWSRIYPEEMIQ------------TGISAIDVM--NSIARGQKIPIFSAAG------------ 175
            ....||   .||.:            ||.....|:  |::.:.:.|....|.|            
  Fly   122 TTALSR---SEMWEFNPLNVRVGSHITGGDLYGVVHENTLVKQRMIVAPRAKGTVRYIAPAGNYN 183

  Fly   176 ----------------------------------LPHNE--IAAQ-------ICRQAGLVKLP-- 195
                                              ||.|.  ...|       .|.|.|...:|  
  Fly   184 LEDIVLETEFDGEITKHTMLQVWPVRQPRPVTEKLPANHPLFTGQRVLDSLFPCVQGGTTAIPGA 248

  Fly   196 ---GKSV----LDDHTDNFAIVFAAMGVNMETARFFKQDFEE---------NGSMENVCLFLNLA 244
               ||:|    |..::::..|::...|..........:||.|         ...|:...|..|.:
  Fly   249 FGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTCEIDGVTESIMKRTALVANTS 313

  Fly   245 NDPTIERIITPRLALTAAEF---LAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGY 306
            |.|...|..:....:|.:|:   :.|    :|.::....|.:||||||:|....|:|...|:|.|
  Fly   314 NMPVAAREASIYTGITLSEYFRDMGY----NVAMMADSTSRWAEALREISGRLAEMPADSGYPAY 374

  Fly   307 MYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLT-GYITEGQIY--VDRQL 363
            :...|||.|||||||:     .|.||::.:..::.|..|.:.|:...| |.:   |::  :|::|
  Fly   375 LGARLATFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIV---QVFWGLDKKL 436

  Fly   364 HNRQIYPPVNVLPSLSRLMKSAIGEGMTRK--DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTP 426
            ..|:.:|.:|.|.|.|:.|: |:.|...:.  :...:..::.......:|:..:..:||:.:|..
  Fly   437 AQRKHFPSINWLISYSKYMR-ALDEYYDKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAE 500

  Fly   427 DDLLYLEFLTKFEKNFISQGNY 448
            .|.:.||.....:.:|:.|.:|
  Fly   501 TDKVTLEVAKLLKDDFLQQNSY 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha55NP_001163597.1 V-ATPase_V1_B 25..488 CDD:273410 122/533 (23%)
Vha68-1NP_001260426.1 V-ATPase_V1_A 15..606 CDD:273411 122/532 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454785
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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