DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha55 and Atp6v1b1

DIOPT Version :9

Sequence 1:NP_001163597.1 Gene:Vha55 / 41550 FlyBaseID:FBgn0005671 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_598918.1 Gene:Atp6v1b1 / 110935 MGIID:103285 Length:513 Species:Mus musculus


Alignment Length:479 Identity:414/479 - (86%)
Similarity:445/479 - (92%) Gaps:1/479 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 REHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEIVQLRLADGTVRSGQVLEVSGSK 72
            :|||.||:|::|:.||:||:||..||||||:||:|||.::||||...|.|||.||||||||:|:|
Mouse    23 QEHVQAVTRNYITHPRVTYRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPDGTQRSGQVLEVAGTK 87

  Fly    73 AVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPI 137
            |:|||||||||||::.|.|||||||||||||||||||:||||||||||||.::||:||||.||||
Mouse    88 AIVQVFEGTSGIDSQKTTCEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPAVMAEEFLDINGQPI 152

  Fly   138 NPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVLDD 202
            ||..|||||||||||||.|||||||||||||||||||||||||||||||||||||| ..|:|||.
Mouse   153 NPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK-KSKAVLDY 216

  Fly   203 HTDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAY 267
            |.|||||||||||||||||||||.|||:||:|.|||||||||||||||||||||||||.||||||
Mouse   217 HEDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAY 281

  Fly   268 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIP 332
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Mouse   282 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIP 346

  Fly   333 ILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSD 397
            ||||||||||||||||||:||||||||||||||||:|||:|||||||||||||||||||||||.|
Mouse   347 ILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQVYPPINVLPSLSRLMKSAIGEGMTRKDHGD 411

  Fly   398 VSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQ 462
            ||||||||||||||||||||||||||||.:||||||||.|||||||:||.|||||||||||:||:
Mouse   412 VSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFEKNFITQGPYENRTVFESLDLGWK 476

  Fly   463 LLRIFPKEMLKRIPASILAEFYPR 486
            ||||||||||||||.|:..|||.|
Mouse   477 LLRIFPKEMLKRIPQSMTDEFYSR 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha55NP_001163597.1 V-ATPase_V1_B 25..488 CDD:273410 405/462 (88%)
Atp6v1b1NP_598918.1 V-ATPase_V1_B 40..504 CDD:273410 405/462 (88%)
ATP-synt_ab_N 44..110 CDD:280947 46/65 (71%)
V_A-ATPase_B 112..395 CDD:238555 259/283 (92%)
ATP-synt_ab_C 410..505 CDD:278722 78/91 (86%)
PDZ-binding. /evidence=ECO:0000250|UniProtKB:P15313 510..513
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 423 1.000 Domainoid score I623
eggNOG 1 0.900 - - E1_COG1156
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62168
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001501
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100544
Panther 1 1.100 - - LDO PTHR43389
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1067
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.780

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