DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta2R and Htr6

DIOPT Version :9

Sequence 1:NP_001163596.2 Gene:Octbeta2R / 41549 FlyBaseID:FBgn0038063 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_077341.2 Gene:Htr6 / 64354 RGDID:62044 Length:438 Species:Rattus norvegicus


Alignment Length:394 Identity:123/394 - (31%)
Similarity:188/394 - (47%) Gaps:69/394 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 PLGTATPATHELNATQPFGGSGLNFNESGAGLSDHHHHQQHNPDEDWLDNIVWVFKAFVMLLIII 165
            |:.::|||........| ||||                              ||..|..:::::.
  Rat     7 PVNSSTPAWGPGPPPAP-GGSG------------------------------WVAAALCVVIVLT 40

  Fly   166 AAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNFSPFLCDLWN 230
            ||  .|.|:|:.:.....||..:|:|:|||..:|:||.::.|.......:.|||..:..||.||.
  Rat    41 AA--ANSLLIVLICTQPALRNTSNFFLVSLFTSDLMVGLVVMPPAMLNALYGRWVLARGLCLLWT 103

  Fly   231 SLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGIMLLNTWISPALLSFLPIFIGWY- 294
            :.||...:||||:||.||:|||..|:.||:|.:.||......::|..|...||.||||:.:||: 
  Rat   104 AFDVMCCSASILNLCLISLDRYLLILSPLRYKLRMTAPRALALILGAWSLAALASFLPLLLGWHE 168

  Fly   295 ----TTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIPCTIMIFTYLAIFREANRQEKQL-MM 354
                .||.        |.||..:.:..:.:::|.::|::|...:.|||..|...|.:|..|: .:
  Rat   169 LGKARTPA--------PGQCRLLASLPFVLVASGVTFFLPSGAICFTYCRILLAARKQAVQVASL 225

  Fly   355 RHGNAMLMHRPSMQPSGEALSGSGSSKTLTLHEVEQEHTPTKDKHLIKMKREHKAAR---TLGII 416
            ..|.|           |:||      :||.:....:....:.|...:..|...||.:   ||||:
  Rat   226 TTGTA-----------GQAL------ETLQVPRTPRPGMESADSRRLATKHSRKALKASLTLGIL 273

  Fly   417 MGTFILCWLPFFLWYTLSMTCEECQVPDIVVSILFWIGYFNSTLNPLIYAYFNRDFREAFRNTLL 481
            :|.|.:.|||||:.......| :|..|.: ..:|.|:||.|||:||:||..|.|||:.|....|.
  Rat   274 LGMFFVTWLPFFVANIAQAVC-DCISPGL-FDVLTWLGYCNSTMNPIIYPLFMRDFKRALGRFLP 336

  Fly   482 CLFC 485
            |:.|
  Rat   337 CVHC 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta2RNP_001163596.2 7tm_4 164..>342 CDD:304433 63/182 (35%)
7tm_1 170..465 CDD:278431 99/303 (33%)
Htr6NP_077341.2 7tm_1 44..320 CDD:278431 99/302 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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