DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta2R and ser-7

DIOPT Version :9

Sequence 1:NP_001163596.2 Gene:Octbeta2R / 41549 FlyBaseID:FBgn0038063 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_741730.1 Gene:ser-7 / 180565 WormBaseID:WBGene00004780 Length:435 Species:Caenorhabditis elegans


Alignment Length:421 Identity:125/421 - (29%)
Similarity:190/421 - (45%) Gaps:86/421 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 AFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNF 221
            |..:|.:||....||.||.::|:.||||:...|:.:||||:||..|.::.|.......:..:|..
 Worm    45 AIAILAMIIMTTVGNALVCLAVLLVRKLKHPQNFLLVSLAVADFFVGLVVMPLALIDLLFDKWPL 109

  Fly   222 SPFLCDLWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPISMTKRVVGIMLLNTWISPALLSF 286
            ...:|.::.:.|:...||||::||.||||||..|..||:|....|.:.:.:.:...||..|::|.
 Worm   110 GSTMCSVYTTSDLTLCTASIVNLCAISVDRYLVISSPLRYSAKRTTKRIMMYIACVWIIAAIVSI 174

  Fly   287 LPIFI------GWYTTPQHQQFVIQNPTQCSFVVNKYYAVISSSISFWIPCTIMIFTYLAIFREA 345
            ....|      |.|         :.:...|..:.:..|...::.|||:.|..||:...:.|:|.|
 Worm   175 SSHIIANLLNDGTY---------VDDTGTCQVIPHFIYQSYATIISFYAPTFIMVILNIKIWRAA 230

  Fly   346 NRQEKQLMMRHGNAMLMHRPSMQPSGEALSGSGSSKTLTLHEVEQEHTPTKDK------HLIKMK 404
            .|...|      :.::.|..|:..|....:||..:|.. |:|.|....|.|::      .|.|::
 Worm   231 KRLAAQ------DRLMSHCNSVDASERPRNGSAETKDF-LNEKETIDVPKKERANSTNSRLFKLE 288

  Fly   405 REH------------------------KAARTLGIIMGTFILCWLPFF---------LWYTLSMT 436
            |::                        ||.:|||:||..||:||||||         :|      
 Worm   289 RKYLHRPSAFFSAAKGPLIRQTEKSECKARKTLGVIMSVFIICWLPFFILAIFKSFGMW------ 347

  Fly   437 CEECQVPDIVVSILFWIGYFNSTLNPLIYAYFNRDFREAFRNTLLCLFCNWWKDRHLPLDIDIRR 501
                 :||.:..:..|:||.|||||||||..:|::||..||..|.|        |...|...:|:
 Worm   348 -----IPDWLDLLALWLGYSNSTLNPLIYCKYNKEFRIPFREMLAC--------RCATLQTVMRQ 399

  Fly   502 SSL--RYDQRAK-SVYSESY---LNSTTPSH 526
            .|.  ||....: ...|.||   |:....||
 Worm   400 QSFTSRYGPPVRYRTQSSSYRPLLSRRNDSH 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta2RNP_001163596.2 7tm_4 164..>342 CDD:304433 55/183 (30%)
7tm_1 170..465 CDD:278431 100/339 (29%)
ser-7NP_741730.1 7tmA_5-HT7 42..382 CDD:320452 109/363 (30%)
TM helix 1 44..68 CDD:320452 9/22 (41%)
TM helix 2 77..99 CDD:320452 9/21 (43%)
TM helix 3 115..137 CDD:320452 8/21 (38%)
TM helix 4 160..176 CDD:320452 4/15 (27%)
TM helix 5 201..224 CDD:320452 7/22 (32%)
TM helix 6 315..340 CDD:320452 15/24 (63%)
TM helix 7 350..375 CDD:320452 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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