DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Octbeta2R and Htr4

DIOPT Version :9

Sequence 1:NP_001163596.2 Gene:Octbeta2R / 41549 FlyBaseID:FBgn0038063 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_032339.2 Gene:Htr4 / 15562 MGIID:109246 Length:388 Species:Mus musculus


Alignment Length:341 Identity:131/341 - (38%)
Similarity:182/341 - (53%) Gaps:55/341 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 MLLIIIAAICGNLLVIISVMRVRKLRVI-TNYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNFSP 223
            :.::|:.||.|||||:::|.|.|:||.| ||||:||||.||::|:::.|.|.....|...|.:..
Mouse    26 LAVVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWAYGE 90

  Fly   224 FLCDLWNSLDVYFSTASILHLCCISVDRYYAI-VKPLKYPISMTKRVVGIMLLNTWISPALLSFL 287
            ..|.:..||||..:||||.||||||:|||||| .:||.|...||...:.:||...|:.|..:|||
Mouse    91 MFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVLPMFISFL 155

  Fly   288 PIFIGW-----YTTPQHQQFV-IQNPTQCSFVVNKYYAVISSSISFWIPCTIMIFTYLAIFREAN 346
            ||..||     ....:.::|. ..|.|.|.|:|||.||:..|.::|:||..:|:..|..|:..|.
Mouse   156 PIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAK 220

  Fly   347 RQEKQL-MMRHGNAMLMHRPSMQPSGEALSGSGSSKTLTLHEVEQEHTPTKDKHLI-KMKREHKA 409
            ...:|: |::...|....||  ||:                          |:|.. :|:.|.||
Mouse   221 EHAQQIQMLQRAGATSESRP--QPA--------------------------DQHSTHRMRTETKA 257

  Fly   410 ARTLGIIMGTFILCWLPFFLW--------YTLSMTCEECQVPDIVVSILFWIGYFNSTLNPLIYA 466
            |:||.:|||.|..||.|||:.        ||         ||:.|.:...|:||.||.|||.:||
Mouse   258 AKTLCVIMGCFCFCWAPFFVTNIVDPFIDYT---------VPEQVWTAFLWLGYINSGLNPFLYA 313

  Fly   467 YFNRDFREAFRNTLLC 482
            :.|:.||.||...|.|
Mouse   314 FLNKSFRRAFLIILCC 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta2RNP_001163596.2 7tm_4 164..>342 CDD:304433 82/185 (44%)
7tm_1 170..465 CDD:278431 119/312 (38%)
Htr4NP_032339.2 7tmA_5-HT4 20..323 CDD:320184 127/333 (38%)
TM helix 1 21..47 CDD:320184 9/20 (45%)
TM helix 2 55..81 CDD:320184 13/25 (52%)
TM helix 3 93..123 CDD:320184 20/29 (69%)
TM helix 4 136..159 CDD:320184 9/22 (41%)
TM helix 5 189..218 CDD:320184 11/28 (39%)
TM helix 6 252..282 CDD:320184 15/29 (52%)
TM helix 7 291..316 CDD:320184 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005484
OrthoInspector 1 1.000 - - otm42843
orthoMCL 1 0.900 - - OOG6_107218
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.810

Return to query results.
Submit another query.