DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Octbeta2R and galr3

DIOPT Version :9

Sequence 1:NP_001163596.2 Gene:Octbeta2R / 41549 FlyBaseID:FBgn0038063 Length:630 Species:Drosophila melanogaster
Sequence 2:XP_004913937.2 Gene:galr3 / 100488248 XenbaseID:XB-GENE-5872135 Length:422 Species:Xenopus tropicalis


Alignment Length:573 Identity:113/573 - (19%)
Similarity:183/573 - (31%) Gaps:224/573 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 GQSLTTLARVTAAALTTAAMLHTTNALAATGSSSASNSSTGGIALPLGTATPATHELNATQPFGG 120
            |:|.....||....|..|.|....|      ||.:|....|||.:|:                  
 Frog    20 GRSAAAYTRVGVVILLVAEMSQAWN------SSVSSELPPGGIIVPV------------------ 60

  Fly   121 SGLNFNESGAGLSDHHHHQQHNPDEDWLDNIVWVFKAFVMLLIIIAAICGNLLVIISVMRVRKLR 185
                                                  |..||......||.||:..::|..:.:
 Frog    61 --------------------------------------VFSLIFALGTVGNGLVLAVLLRNGQTK 87

  Fly   186 V-ITNYFVVSLAMADIMVAIMAMTFNFSVQVTGRWNFSPFLCDLWNSLDVYFST-ASILHLCCIS 248
            . .||.|:::|.:||:...::.:.|..::.....|.|..|||...: ..:|.|. ||...|..:|
 Frog    88 YNTTNLFILNLGVADLCFILLCVPFQATIYTLDGWLFGAFLCKAVH-FSIYLSMYASSFTLAAVS 151

  Fly   249 VDRYYAIVKPLKYPISMTKR----VVGIMLLNTWISPALLSFLPIFIGWYTTPQHQQFVIQNPTQ 309
            ||||.||..|||.....|.|    .:|::    |    .||.|  |.|.|               
 Frog   152 VDRYLAIRYPLKSRDLRTSRNALAAIGVI----W----ALSIL--FAGPY--------------- 191

  Fly   310 CSFVVNKYYAVISSSISFWIP-----------CTIMIFTYLAIFREANRQEKQLMMRHGNAMLMH 363
                ::.|:.::.:.:...||           .:..:|.||.                       
 Frog   192 ----LSYYHIILYNQVPICIPNWEDRRRKIMDVSTFVFGYLL----------------------- 229

  Fly   364 RPSMQPSGEALSGSGSSKTLTL--HEVEQEHTPTKDKHLIKMKREHKAARTLGIIMGTFILCWLP 426
             |.:      :.|...::|:..  ..|:...|.::.:     |.:||..:.:.|:...|.:||||
 Frog   230 -PVL------ILGLSYARTICFLWTSVDPVKTASESR-----KAKHKVTKMIIIVAVLFCICWLP 282

  Fly   427 FFLWYTLSMTCEECQVPDIVVSILFWIGYF-------------------NSTLNPLIYAYFNRDF 472
            ..|                 |.:.||.|:|                   ||.|||::||..::.|
 Frog   283 HHL-----------------VILCFWFGHFPFNKATYAFRLVSHCMSYANSCLNPIVYALISKHF 330

  Fly   473 REAFRNTLLCLFCNWWKDRHLPLDIDIRRSSLRYDQRAKSVYSESYLNSTTPSHRRQSQMVDNLX 537
            |:.|:....||.                 :..|...:..:|.:.:.:......|           
 Frog   331 RKRFKQVFTCLL-----------------TQKRARNKVHAVQAANTIAGFYAGH----------- 367

  Fly   538 YRDEALLTPIAQQQQRLAAGGSRLGGQLAAAAKDGRESKDAKDTGKDAGKGKS 590
                   |.:.|.|:....||       .||.::|.:|...:|:.....:|.|
 Frog   368 -------TEVTQVQEDSGRGG-------RAAREEGADSGSPEDSVNQRMEGGS 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta2RNP_001163596.2 7tm_4 164..>342 CDD:304433 48/194 (25%)
7tm_1 170..465 CDD:278431 73/332 (22%)
galr3XP_004913937.2 7tmA_Gal2_Gal3_R 56..334 CDD:320225 82/415 (20%)
TM helix 1 57..83 CDD:320225 8/81 (10%)
TM helix 2 91..117 CDD:320225 7/25 (28%)
TM helix 3 129..159 CDD:320225 12/30 (40%)
TM helix 4 171..191 CDD:320225 8/29 (28%)
TM helix 5 215..244 CDD:320225 6/58 (10%)
TM helix 6 260..290 CDD:320225 11/46 (24%)
TM helix 7 302..327 CDD:320225 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.