Protein Alignment Polr3C and AT3G49000

DIOPT Version :10

• Sequence 1: NP_650207.1
• Gene: Polr3C / 41542
• FlyBaseID: FBgn0038057
• Length: 522
• Species: Drosophila melanogaster
• Sequence 2: NP_566914.1
• Gene: AT3G49000 / 824061
• AraportID: AT3G49000
• Length: 523
• Species: Arabidopsis thaliana
• Alignment Length: 541
• Identity: 105/541 - (19%)
• Similarity: 220/541 - (40%)
• Gaps: 94/541 - (17%)

  Fly    17 FGKVVQAVADCLF---SATTRTLGQITSATKLSRKEVAFALAVLVKFRLV--------DFAASKA 70
            ||.||..|.:||.   ..::|.:.:: :.:.::..:|...|.:|::...|        |.:.|||
plant    19 FGSVVSKVCECLLRKGPLSSRDISRL-AESDINHNKVKDILYLLIQHNCVQAFSIEPPDGSESKA 82

  Fly    71 NPFLAEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILLKCLAENENKA 135
               :.:|.:...::|..:||.::..:|..:..:...::.:.|:::|..| .|..::...::.|..
plant    83 ---IVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDGLLSNGRLT-LGQFIERDRDSGNTI 143

  Fly   136 ESPESYRNTFLEMITDHYI--IKRPELLVGDDQDENVPKFETNECDFFRHP-NIDLQLLAKI--- 194
            .| |:.|::..:::...::  |..||.::|:.:.|...:.........:.| .::.|::...
plant   144 GS-EAIRDSLQKLVAARFVERIPSPEPVLGNKEKEPAKRRGAKAAKILKEPETLEEQVVEAATPV 207

  Fly   195 ----------QKGEATLAE-----------ARD-------SHMVWHLNHDRFHQDFRDTIMVDAI 231
                      :...::||:           .||       |.::|..|.:.|....|....|:.:
plant   208 DAIRFPLIFEEDSNSSLADDNSNITEGKRKQRDVDTSDSSSGVIWRPNFEEFIHRLRHKACVEIV 272

  Fly   232 ERKLGENAAECFKFILKIMYNTTDPWERKL----SNQITFVEI-KQAIERKSNNLDLMKYLDQYI 291
            :.:..|..|    .:|:.|.......|:|:    |..::...| ::.|:.::....|.:.::..:
plant   273 KERRDEGCA----IVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACL 333

  Fly   292 SLLTEDSL---GFFRRVGDMGGGVYVVDMEHAFESLAFACVECVITERFGSKAARIFRVIRCK-K 352
            ..|:..|.   .|...|.|.    |:||.:..........:|.|:..|:|.:|.|:||.:..: :
plant   334 DQLSATSSYLPAFVNEVNDS----YIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGR 394

  Fly   353 YIEQEDLQKEAMIPSKEAKSLAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLL 417
            ::|.:.:...|:...|:.......::::.::|::.:.....|...|   |.|::|.:......:|
plant   395 FVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTP---FLLWKVNKLIVTTQML 456

  Fly   418 DASYKSLYNTIERSNFEKNEHKGLIEKSQRLDSIVEAMKERGETDEYIAEIVETFTPPECEILNK 482
            |..|.:..|...|...|....|.|:  ...||.:...:|||                     |.|
plant   457 DEMYHASLNLSLRLAHELEAEKELL--LLPLDKLEGPLKER---------------------LKK 498

  Fly   483 VKNRIKTLSKAELTLDDTIFL 503
            ||.:...||.....|||.|.|
plant   499 VKAKRLLLSSTMFKLDDAIML 519

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3C	NP_650207.1	HTH_9	7..67	CDD:400500	13/60 (22%)
		RNA_pol_Rpc82	143..324	CDD:398977	35/222 (16%)
AT3G49000	NP_566914.1	HTH_9	10..70	CDD:400500	12/51 (24%)
		RNA_pol_Rpc82	150..364	CDD:398977	35/221 (16%)