DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trus and PDCD2

DIOPT Version :9

Sequence 1:NP_650205.1 Gene:trus / 41540 FlyBaseID:FBgn0038055 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_002589.2 Gene:PDCD2 / 5134 HGNCID:8762 Length:344 Species:Homo sapiens


Alignment Length:498 Identity:101/498 - (20%)
Similarity:159/498 - (31%) Gaps:196/498 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VYLGYEDEEVT--AKQEQLLNSCTNKIGGTPDW------PRHEVTIPSCPLCGAVRPL--IVQMY 62
            |.||:.:....  .:.||.    .:|:||.|.|      |..:..  :|.|||  |||  ::|:|
Human     9 VELGFAESAPAWRLRSEQF----PSKVGGRPAWLGAAGLPGPQAL--ACELCG--RPLSFLLQVY 65

  Fly    63 APLD--RSQFHRSLYVFGCMNPVCSQNSKSWCCVRTQHLD-HQYEVISEHSPKATPTKKQNSKKK 124
            |||.  ...|||.:::|.|....|....:.:.....:..| :.||..||:.|..|........|.
Human    66 APLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKS 130

  Fly   125 GKSSGLQAISWCSGADDWGDSSGGATEQAKTISVALDEAMDITADDDQNERNGNVRPNALQYAKS 189
            |  :.|..:..|.|              .||.|                      |.:...|...
Human   131 G--AHLCRVCGCLG--------------PKTCS----------------------RCHKAYYCSK 157

  Fly   190 DIQ-IDEPAKLEQVKIAADDDDDEDESTSLENELISGFHQMDMISPQNADDDPNANCAAAAAPSL 253
            :.| :|  .:|...:..|..|                  .:|.|.|.:                 
Human   158 EHQTLD--WRLGHKQACAQPD------------------HLDHIIPDH----------------- 185

  Fly   254 DGAGASAASAAIGAEIEGPETDLVLVDTPKKPERDLIALLKHTSGALSQIKDLTLKSYYIAVDVE 318
                          ....||.::|:     :.|.:::..:                       ||
Human   186 --------------NFLFPEFEIVI-----ETEDEIMPEV-----------------------VE 208

  Fly   319 NKTQAEEYENFGGALSMDHIRDLYQEYKLRDQNPGQSPTGGASGPGEQGDENESYEKALPAHGDL 383
            .:..:|...:.|.||.                              |:.|....:|    :..|.
Human   209 KEDYSEIIGSMGEALE------------------------------EELDSMAKHE----SREDK 239

  Fly   384 VFHNFITTIHQNPGQLLRYSRDTIPLLVA----PFTEPLPKCQNCRGETICEVQLLPTLIPKLRF 444
            :|..|.|.|...|.|:|||.|...|:.::    |..:.:|.|. |..:.|.|.|::|.|:..|: 
Human   240 IFQKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPDCP-CGAKRILEFQVMPQLLNYLK- 302

  Fly   445 QVNGCNAPIEFGNVLVFTCLKSC-----------W-----DTP 471
             .:.....|::|.:.||||.:||           |     |||
Human   303 -ADRLGKSIDWGILAVFTCAESCSLGTGYTEEFVWKQDVTDTP 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trusNP_650205.1 PDCD2_C 371..482 CDD:282100 35/121 (29%)
PDCD2NP_002589.2 zf-MYND 135..172 CDD:307734 10/74 (14%)
PDCD2_C 226..339 CDD:309358 33/119 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3310
OMA 1 1.010 - - QHG54449
OrthoDB 1 1.010 - - D1181470at2759
OrthoFinder 1 1.000 - - FOG0001596
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1686
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
76.810

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