DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18549 and srw-56

DIOPT Version :9

Sequence 1:NP_650203.3 Gene:CG18549 / 41538 FlyBaseID:FBgn0038053 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_001023889.1 Gene:srw-56 / 3565971 WormBaseID:WBGene00005803 Length:355 Species:Caenorhabditis elegans


Alignment Length:306 Identity:60/306 - (19%)
Similarity:103/306 - (33%) Gaps:99/306 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTSLAIIYLFFSLSNWLAPSFISFTGPRVAMV 79
            |::::...:|:..|.:.:..|.        |.....|.::.|.:.||.......:|.:|.|:..:
 Worm   117 FVYIYIYSETVSMIAQKLAVSF--------GVAMAILRVVILKYPLSRRAQDLIMSGSGIRIIFI 173

  Fly    80 VGALTYTAFMITFMFPSTVLLYVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQC 144
            | .|.:..|   :.|                 .:.||       ...|:.|....||       |
 Worm   174 V-CLPHLPF---WFF-----------------DLQWT-------EIRENGTWKPPSG-------C 203

  Fly   145 SMFIG-NLFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDNELEQKHTG 208
            ..|.. :|...|.|:....|: ||...:.|:|..: |..|:...|..|:                
 Worm   204 KNFSDHSLHTKYSFEHGEDIN-ETLRFMEGILFTV-VPSIILPIATGFL---------------- 250

  Fly   209 CGQAIYALK----------SAGQLFLTKKMLLLSLAFF-------------YTGLE--LSFFSGV 248
                |||||          |.|.   ||.::|:::.|.             :.||:  |:||..:
 Worm   251 ----IYALKTMTRAATSSRSNGS---TKMVVLITVTFLIATFPLGMTYFVNFLGLDDILAFFLYI 308

  Fly   249 FGSAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTR 294
            .|....|.:.|..|...:     :|.....::...:..:.|.|..|
 Worm   309 IGIFCEFVSIINGTLHFV-----LCACVSSLYQNTVKEMFGRKKAR 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18549NP_650203.3 MFS_MFSD11 8..423 CDD:340965 60/306 (20%)
srw-56NP_001023889.1 7TM_GPCR_Srw 38..346 CDD:370978 58/301 (19%)
TM helix 2 68..93 CDD:341315
TM helix 3 121..151 CDD:341315 5/37 (14%)
TM helix 4 165..181 CDD:341315 4/16 (25%)
TM helix 5 213..249 CDD:341315 10/37 (27%)
TM helix 6 264..294 CDD:341315 6/32 (19%)
TM helix 7 307..332 CDD:341315 5/29 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3098
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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