DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Srlp and ech-9

DIOPT Version :9

Sequence 1:NP_650199.1 Gene:Srlp / 41533 FlyBaseID:FBgn0038049 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_501875.2 Gene:ech-9 / 184065 WormBaseID:WBGene00001158 Length:434 Species:Caenorhabditis elegans


Alignment Length:363 Identity:64/363 - (17%)
Similarity:106/363 - (29%) Gaps:144/363 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 QEAEAAPPKNILVEKDKNITLIGINRPQQRNAIDSLTAS----QLCDAFANFEADDTSPVAVLYG 99
            ||.|      ::..::|:...:...|.::.||...:|:.    ..||.......:|......|:.
 Worm    77 QELE------VMYAREKSFKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFA 135

  Fly   100 ----------VGGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGINGYCIA 154
                      :.|:..|..|:.|||:         :|..|...||                    
 Worm   136 NLENICKSTCIFGTNTSSLDLNEISS---------VLRDPSNLVG-------------------- 171

  Fly   155 NGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLSRALDLILTGRPVGSQEAHD 219
                               :.|||        .|..|||..          |:.|....||    
 Worm   172 -------------------IHFFN--------PANVIRLVE----------IIYGSHTSSQ---- 195

  Fly   220 IGLVNRIVPTGTALGNALELATCLAKFPQ----------RALIHDRNSVYSSTFETSTFHQAVQN 274
                        |:..|.:....:.|.|.          ..|:|    ||   |:.|   |.:..
 Worm   196 ------------AIATAFQACESIKKLPVLVGNCKSFVFNRLLH----VY---FDQS---QKLMY 238

  Fly   275 EVMFTSREIIEDMQNGIKWFNQTFKPDTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAAL 339
            |..:...:|              .|..|...:|....::||.:..:|      .||||:|.  .|
 Worm   239 EYGYLPHQI--------------DKIITNFGFLMGPMTVADMNGFDV------MEKLKKEN--GL 281

  Fly   340 AEAEKQKQAEKAQKRSKKTEESAAESVDSKDPKDKPNE 377
            .....:|:..:.::..:||.:...:..|....|:...|
 Worm   282 EPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTE 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SrlpNP_650199.1 crotonase-like 49..259 CDD:304874 36/233 (15%)
ech-9NP_501875.2 FadB 38..317 CDD:224170 63/359 (18%)
3HCDH_N 41..217 CDD:280833 37/227 (16%)
3HCDH 220..307 CDD:279114 24/118 (20%)
3HCDH 343..>397 CDD:279114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.