DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Srlp and B0272.4

DIOPT Version :9

Sequence 1:NP_650199.1 Gene:Srlp / 41533 FlyBaseID:FBgn0038049 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_509583.1 Gene:B0272.4 / 181892 WormBaseID:WBGene00007130 Length:255 Species:Caenorhabditis elegans


Alignment Length:254 Identity:70/254 - (27%)
Similarity:111/254 - (43%) Gaps:56/254 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 ILVEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLY--GVGGSFCSGFDI- 110
            ||.|:..|:..:.:|||::.||:.......||..| |..|||.....|::  |.|..:|:|.|. 
 Worm     6 ILTERKNNVLWVTLNRPKKFNALTRQMFLDLCTVF-NDAADDDDIAFVVFTGGKGKYYCAGSDFS 69

  Fly   111 ---LEISTDEKE---EISVDILMRPEGSVGPTRRQIKKPVVCGINGYCIANGLELALMCDLRVME 169
               |...||.:|   ::.||||:           ...||::..:||:.:  |:.:.:   |.||:
 Worm    70 PAELSTLTDIQEHGYKLFVDILI-----------AFPKPIIALVNGHAV--GVSVTM---LGVMD 118

  Fly   170 ESAVLGFFNRRFGVPMLDAG-------TIRLPAMIGLSRALDLILTGRPVGSQEAHDIGLVNRIV 227
              ||:......|..|..|.|       :..||.::|..:|..|::......:.|||..|||.:|:
 Worm   119 --AVIAIDTATFATPFADIGVCPEACSSYTLPRIMGHQKAAALMMFSEKFTAHEAHIAGLVTQIL 181

  Fly   228 PTGTALGNALELATCLAKFPQRALIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIED 286
            |..|...:|.:             |.||.|      :.|.....|..|:|.|::  |:|
 Worm   182 PAATFEKDAKK-------------IIDRYS------KLSPITMKVAKELMRTTQ--IKD 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SrlpNP_650199.1 crotonase-like 49..259 CDD:304874 63/225 (28%)
B0272.4NP_509583.1 crotonase-like 6..196 CDD:119339 60/221 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.