DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Srlp and ech-8

DIOPT Version :9

Sequence 1:NP_650199.1 Gene:Srlp / 41533 FlyBaseID:FBgn0038049 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_501876.2 Gene:ech-8 / 177905 WormBaseID:WBGene00001157 Length:437 Species:Caenorhabditis elegans


Alignment Length:113 Identity:26/113 - (23%)
Similarity:45/113 - (39%) Gaps:23/113 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 GFDILEISTDEKE-EISVDILMRPEGSVGPTRRQIKK----------PVVC-GINGYCIANGLEL 159
            |:...:.:|.:|| :|.::.|:|...|......||..          |:|. |:  .||..|:  
 Worm   306 GYYKYDPNTHKKENDIEMEQLIRKFSSAASPNIQILNDQDAVNFLLYPMVNEGL--LCIEEGI-- 366

  Fly   160 ALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLSRALDLIL 207
                   :..||.:...|...||.|:...|.:|...:.|:.:....|:
 Worm   367 -------IHHESLIDIMFILGFGWPVATGGPMRFGWLQGIEKVASTII 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SrlpNP_650199.1 crotonase-like 49..259 CDD:304874 26/113 (23%)
ech-8NP_501876.2 FadB 38..312 CDD:224170 1/5 (20%)
3HCDH_N 41..220 CDD:280833
3HCDH 223..310 CDD:279114 1/3 (33%)
3HCDH 347..>391 CDD:279114 13/54 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1024
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.