DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha2 and clcn1

DIOPT Version :10

Sequence 1:NP_524328.1 Gene:Prosalpha2 / 41531 FlyBaseID:FBgn0086134 Length:234 Species:Drosophila melanogaster
Sequence 2:XP_031761520.1 Gene:clcn1 / 101731973 XenbaseID:XB-GENE-6085854 Length:942 Species:Xenopus tropicalis


Alignment Length:163 Identity:35/163 - (21%)
Similarity:50/163 - (30%) Gaps:54/163 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 QRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLY-------------------------QSDP 151
            :|::.:.......|..|..|      .|.:|..|.|                         :..|
 Frog     5 RRLSLMEDPKANEGNERKSG------WWGDDPQYQYMQLRDCSSYGIPSETSPPPLQETLEEQPP 63

  Fly   152 S-----GAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDA-------VHTAILTLKEGFEGKMT 204
            |     |.|....:....|.||  |...||:.:|..:..|.       .|..|..||:....|:.
 Frog    64 SQKQTYGHYTEELSQFARKEAV--KLLQEKQRAEPTKPPDVQKECYSKCHRCIQRLKQYIIKKLA 126

  Fly   205 ADNIEIGICDQNGF------QRLDPASIKDYLA 231
            .|.|.:.:.   ||      ..:|.||.|..||
 Frog   127 EDWIFLVLL---GFVMAIVSWSMDYASSKSLLA 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha2NP_524328.1 proteasome_alpha_type_2 6..231 CDD:239719 33/161 (20%)
clcn1XP_031761520.1 ClC_1_like 128..601 CDD:239655 10/32 (31%)
CBS_pair_voltage-gated_CLC_euk_bac 614..851 CDD:341367
CBS repeat 619..802 CDD:341367
CBS repeat 808..850 CDD:341367
Blue background indicates that the domain is not in the aligned region.

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