DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5245 and PRDM9

DIOPT Version :9

Sequence 1:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_001297143.1 Gene:PRDM9 / 56979 HGNCID:13994 Length:894 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5245NP_650197.1 COG5048 74..478 CDD:227381
C2H2 Zn finger 84..104 CDD:275368
C2H2 Zn finger 112..132 CDD:275368
C2H2 Zn finger 139..159 CDD:275368
C2H2 Zn finger 167..187 CDD:275368
zf-H2C2_2 179..204 CDD:290200
C2H2 Zn finger 195..215 CDD:275368
C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 250..270 CDD:275368
C2H2 Zn finger 278..298 CDD:275368
C2H2 Zn finger 306..326 CDD:275368
C2H2 Zn finger 334..354 CDD:275368
C2H2 Zn finger 362..382 CDD:275368
C2H2 Zn finger 390..410 CDD:275368
C2H2 Zn finger 418..438 CDD:275368
C2H2 Zn finger 446..466 CDD:275368
C2H2 Zn finger 474..492 CDD:275368
PRDM9NP_001297143.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
KRAB 27..85 CDD:214630
KRAB 27..62 CDD:279668
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..174
SSXRD 171..201 CDD:286586
SET 246..364 CDD:214614
S-adenosyl-L-methionine binding. /evidence=ECO:0000269|Ref.9 256..258
Substrate binding. /evidence=ECO:0000250|UniProtKB:Q96EQ9 288..294
S-adenosyl-L-methionine binding. /evidence=ECO:0000269|Ref.9 320..321
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 408..469
COG5048 <528..671 CDD:227381
C2H2 Zn finger 528..546 CDD:275368
C2H2 Zn finger 554..574 CDD:275368
zf-H2C2_2 566..590 CDD:290200
C2H2 Zn finger 582..602 CDD:275368
zf-H2C2_2 595..619 CDD:290200
C2H2 Zn finger 610..630 CDD:275368
COG5048 <611..878 CDD:227381
zf-H2C2_2 623..647 CDD:290200
C2H2 Zn finger 638..658 CDD:275368
zf-H2C2_2 651..674 CDD:290200
C2H2 Zn finger 666..686 CDD:275368
zf-H2C2_2 679..702 CDD:290200
C2H2 Zn finger 694..714 CDD:275368
zf-H2C2_2 707..731 CDD:290200
C2H2 Zn finger 722..742 CDD:275368
DNA-binding. /evidence=ECO:0000269|PubMed:26833727 730..820
zf-H2C2_2 734..757 CDD:290200
C2H2 Zn finger 750..770 CDD:275368
zf-H2C2_2 762..785 CDD:290200
C2H2 Zn finger 778..798 CDD:275368
zf-H2C2_2 790..815 CDD:290200
C2H2 Zn finger 806..826 CDD:275368
zf-H2C2_2 818..843 CDD:290200
C2H2 Zn finger 834..854 CDD:275368
zf-H2C2_2 846..870 CDD:290200
C2H2 Zn finger 862..882 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.