DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5245 and CG4360

DIOPT Version :10

Sequence 1:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_650879.1 Gene:CG4360 / 42413 FlyBaseID:FBgn0038787 Length:556 Species:Drosophila melanogaster


Alignment Length:465 Identity:122/465 - (26%)
Similarity:183/465 - (39%) Gaps:138/465 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 TQNSSLKQHLHEHTGER------PFK---CTQCSTSFARKSHLQVHLRTHSEERPFECTHCEKAF 202
            |..|.:||.:.....|.      |.|   |..|...|.:.:.|:.|::.|::|||::|.||:|||
  Fly   115 TPISPMKQEVQSVISEEEVVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAF 179

  Fly   203 KNNSHLQEHLRTHQEARPFKCSHCSKSFKLRSILQKHLLTH--AERSFKCTQCPKTFL------- 258
            :..|.|..|::.|...:||.|:.|:|.|:.:|.|..|:.||  ||.|     .|.:.|       
  Fly   180 RQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESS-----TPTSLLNYQPQTG 239

  Fly   259 ---------------QNDSLQIHLRVHAGEDPFKCPHCSETFARNSRLQLHLLEHAGKEPLKCSQ 308
                           |:..:||...:::|.  :..|...|..                :|.:||.
  Fly   240 SGKHRKSQMHQAYQQQHQRVQISKTLYSGS--YSSPAAEELV----------------KPFQCSV 286

  Fly   309 CSATFAMRSLYRVHVRLHTRERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRT 373
            |...|...|....|.|.|...:.|||..|.|||.:.:.|..|:::|||::|:.|::|...|:.::
  Fly   287 CKRRFPQLSTLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQS 351

  Fly   374 HLRVHMLDHIGEKVP---------------------KCSYCSKEFKLSSQLL-----------VH 406
            .|..|:..|..:..|                     .........:|:|.||           :.
  Fly   352 TLTNHLKTHTHQIAPGGVGGAGGGGGAVTATVDHSMPAPLAPGTQQLTSGLLPNNLHGSTANIIQ 416

  Fly   407 LQEH-----------------------------------------------TGKN---QFECPHC 421
            |..|                                               .|.|   .|.|..|
  Fly   417 LDHHPLLHFLDGSTTVSSVVATAAANTKVEHFQAGGSPSGRMTVVGTINMLKGDNPDRPFGCSVC 481

  Fly   422 SKSYTTSSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHCSTRYTQKSS 486
            .:.::..|||..|::|||||.|:||..|...|.:.|....|::.|||||||.||.|..::.|||:
  Fly   482 QRFFSQQSTLVNHIKTHTGEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSFCPKQFRQKST 546

  Fly   487 LGRHLRRTLC 496
            |..|||...|
  Fly   547 LQNHLRVHTC 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5245NP_650197.1 COG5048 74..478 CDD:227381 113/445 (25%)
C2H2 Zn finger 84..104 CDD:275368
C2H2 Zn finger 112..132 CDD:275368
C2H2 Zn finger 139..159 CDD:275368 4/11 (36%)
C2H2 Zn finger 167..187 CDD:275368 5/19 (26%)
C2H2 Zn finger 195..215 CDD:275368 9/19 (47%)
C2H2 Zn finger 223..243 CDD:275368 7/19 (37%)
C2H2 Zn finger 250..270 CDD:275368 5/41 (12%)
C2H2 Zn finger 278..298 CDD:275368 2/19 (11%)
C2H2 Zn finger 306..326 CDD:275368 7/19 (37%)
C2H2 Zn finger 334..354 CDD:275368 7/19 (37%)
C2H2 Zn finger 362..382 CDD:275368 5/19 (26%)
C2H2 Zn finger 390..410 CDD:275368 5/30 (17%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
C2H2 Zn finger 446..466 CDD:275368 5/19 (26%)
C2H2 Zn finger 474..492 CDD:275368 8/17 (47%)
CG4360NP_650879.1 C2H2 Zn finger 144..164 CDD:275368 5/19 (26%)
zf-H2C2_2 157..181 CDD:463886 12/23 (52%)
C2H2 Zn finger 172..192 CDD:275368 9/19 (47%)
C2H2 Zn finger 200..220 CDD:275368 7/19 (37%)
zf-C2H2_8 281..366 CDD:464935 28/84 (33%)
C2H2 Zn finger 284..304 CDD:275368 7/19 (37%)
C2H2 Zn finger 312..332 CDD:275368 7/19 (37%)
zf-H2C2_2 325..349 CDD:463886 9/23 (39%)
C2H2 Zn finger 340..360 CDD:275368 5/19 (26%)
C2H2 Zn finger 478..498 CDD:275368 6/19 (32%)
C2H2 Zn finger 506..526 CDD:275368 5/19 (26%)
zf-H2C2_2 519..543 CDD:463886 11/23 (48%)
C2H2 Zn finger 534..554 CDD:275368 10/19 (53%)
Blue background indicates that the domain is not in the aligned region.

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