DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5245 and trem

DIOPT Version :10

Sequence 1:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:237 Identity:69/237 - (29%)
Similarity:108/237 - (45%) Gaps:39/237 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGKDLEPV---KGVPSKLKTCKSKIAKKRP 74
            :|||:|:..|:  |..|:.|::  .:..|.|.....|:  :||   |..| |::|.|.|:.:|. 
  Fly   209 EEPPEEEIAED--ILDSDEDYD--PTHAKPEKCDRSGR--KPVAYHKNSP-KVETFKKKVGRKP- 265

  Fly    75 LRKQTDTFKCTQCQKTFTRKENLESHLRLHAEERPFECSHCSKSFGRRTHYKRHLLKHEKRPHKC 139
             |.:..|:.|..|...:..:..|..|::.|:                           ..:||:|
  Fly   266 -RNKLSTYICDVCGNIYPTQARLTEHMKFHS---------------------------GVKPHEC 302

  Fly   140 SHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARKSHLQVHLRTHSEERPFECTHCEKAFKN 204
            ..|.:.|.||..|.:|::.|||.||:||..|..:||.:|....|.|.|::|||:.|..|.:.|..
  Fly   303 EICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTY 367

  Fly   205 NSHLQEHLRTHQEARPFKCSHCSKSFKLRSILQKHLLTHAER 246
            :.:|:.|...|...:|..|..|.|.|.....|:.|..||..|
  Fly   368 SDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLRLHRETHNRR 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5245NP_650197.1 COG5048 74..478 CDD:227381 49/173 (28%)
C2H2 Zn finger 84..104 CDD:275368 4/19 (21%)
C2H2 Zn finger 112..132 CDD:275368 0/19 (0%)
C2H2 Zn finger 139..159 CDD:275368 7/19 (37%)
C2H2 Zn finger 167..187 CDD:275368 7/19 (37%)
C2H2 Zn finger 195..215 CDD:275368 5/19 (26%)
C2H2 Zn finger 223..243 CDD:275368 6/19 (32%)
C2H2 Zn finger 250..270 CDD:275368
C2H2 Zn finger 278..298 CDD:275368
C2H2 Zn finger 306..326 CDD:275368
C2H2 Zn finger 334..354 CDD:275368
C2H2 Zn finger 362..382 CDD:275368
C2H2 Zn finger 390..410 CDD:275368
C2H2 Zn finger 418..438 CDD:275368
C2H2 Zn finger 446..466 CDD:275368
C2H2 Zn finger 474..492 CDD:275368
tremNP_650861.1 zf-AD 11..87 CDD:214871
COG5048 <264..411 CDD:227381 50/175 (29%)
C2H2 Zn finger 274..294 CDD:275368 4/19 (21%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
C2H2 Zn finger 330..350 CDD:275368 7/19 (37%)
C2H2 Zn finger 358..378 CDD:275368 5/19 (26%)
C2H2 Zn finger 386..406 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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