DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5245 and CG4854

DIOPT Version :10

Sequence 1:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster


Alignment Length:239 Identity:72/239 - (30%)
Similarity:117/239 - (48%) Gaps:21/239 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LANVDQRPVKDEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGKDLEPVKGV---PSKLKT 64
            |..::...|.||  ||...:.|...:|.::....:||::.|...||...||..:.|   ..:|.:
  Fly    83 LQEINIEIVHDE--QETKKKTESRDLSKNEATGSDSELEYEYLDSYDVTLESSEDVACSADELVS 145

  Fly    65 CKSKIA---------KKRPL------RKQTDTFKCTQCQKTFTRKENLESHLRLHAEERPFECSH 114
            .:..|:         ..:|:      ..|..:|.|..|...::.:..|.:|:::|:.::|.||..
  Fly   146 IEPAISAPEESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVHSAKKPHECEI 210

  Fly   115 CSKSFGRRTHYKRHLLKHE-KRPHKCSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARKS 178
            |.|.|.:.....||:..|. .||:||.:|...|...|:..:|...||.|||:||..||.||...:
  Fly   211 CHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSN 275

  Fly   179 HLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFK 222
            .|:|||:||:.||||.|.:|:|:|....|...|.::|:..:..|
  Fly   276 VLRVHLKTHTGERPFSCQYCQKSFSQLHHKNSHEKSHKRTKEVK 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5245NP_650197.1 COG5048 74..478 CDD:227381 54/156 (35%)
C2H2 Zn finger 84..104 CDD:275368 4/19 (21%)
C2H2 Zn finger 112..132 CDD:275368 6/19 (32%)
C2H2 Zn finger 139..159 CDD:275368 5/19 (26%)
C2H2 Zn finger 167..187 CDD:275368 9/19 (47%)
C2H2 Zn finger 195..215 CDD:275368 6/19 (32%)
C2H2 Zn finger 223..243 CDD:275368 72/239 (30%)
C2H2 Zn finger 250..270 CDD:275368
C2H2 Zn finger 278..298 CDD:275368
C2H2 Zn finger 306..326 CDD:275368
C2H2 Zn finger 334..354 CDD:275368
C2H2 Zn finger 362..382 CDD:275368
C2H2 Zn finger 390..410 CDD:275368
C2H2 Zn finger 418..438 CDD:275368
C2H2 Zn finger 446..466 CDD:275368
C2H2 Zn finger 474..492 CDD:275368
CG4854NP_650860.1 zf-AD 12..>57 CDD:214871
C2H2 Zn finger 180..200 CDD:275368 4/19 (21%)
COG5048 201..>258 CDD:227381 18/56 (32%)
C2H2 Zn finger 208..228 CDD:275368 6/19 (32%)
zf-H2C2_2 221..244 CDD:463886 8/22 (36%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
zf-H2C2_2 251..271 CDD:463886 10/19 (53%)
C2H2 Zn finger 264..284 CDD:275368 9/19 (47%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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