back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG5245 and crol

DIOPT Version :10

Sequence 1:	NP_650197.1	Gene:	CG5245 / 41530	FlyBaseID:	FBgn0038047	Length:	501	Species:	Drosophila melanogaster
Sequence 2:	NP_477243.1	Gene:	crol / 34592	FlyBaseID:	FBgn0020309	Length:	962	Species:	Drosophila melanogaster

Alignment Length:	425	Identity:	164/425 - (38%)
Similarity:	232/425 - (54%)	Gaps:	8/425 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly    76 RKQTD-TFKCTQCQKTFTRKENLESHLRLHAEERPFECSHCSKSFGRRTHYKRHLLKHE-KRPHK 138
            |..|| .|.||.|||||.|||:|::|.|.|..|.||.|.:|:|:|.|:.|...|:.||. :.||:
  Fly   298 RHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHR 362

  Fly   139 CSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARKSHLQVHLRTHSEERPFECTHCEKAFK 203
            |..|.|:||:......|...|||:.|.:|..|...:.||.||..|:|:|:.|.||.|..|.|:|.
  Fly   363 CDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFS 427

  Fly   204 NNSHLQEHLRTHQEARPFKCSHCSKSFKLRSILQKHLLTH-AERSFKCTQCPKTFLQNDSLQIHL 267
            ...|...|:..|....|.:|..|||:|..:..|..|:..| .|...:|:.|.|||.:.:.|..|:
  Fly   428 RKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHI 492

  Fly   268 RVHAGEDPFKCPHCSETFARNSRLQLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHTRERQY 332
            |.|.||.||||.:|::.|.|...:..|:.:|.|:.|.||:.|:.||..:.....|||.||.:..:
  Fly   493 RQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPH 557

  Fly   333 KCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTHLRVHMLDHIGEKVPKCSYCSKEF 397
            :|:.|.|:|.:|.||..|.::|||:.|.||.:|.|.|..:.||..||..|..:....|:.|:|.|
  Fly   558 RCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPF 622

  Fly   398 KLSSQLLVHLQE-HTGKNQFECPHCSKSYTTSSTLHMHLRTHTG----ELPFKCSHCSKLFARSA 457
            .....|:.|:.. |||...|.|..|.||:.....|..|.|:||.    |.||.|..|.|.|....
  Fly   623 TRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKG 687

  Fly   458 EHQEHLRTHTGEKPYKCSHCSTRYTQKSSLGRHLR 492
            ....|:|:|:||||:.|:.||..:.::.:|.||::
  Fly   688 HLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMK 722

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.