DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5245 and Zfp54

DIOPT Version :10

Sequence 1:NP_650197.1 Gene:CG5245 / 41530 FlyBaseID:FBgn0038047 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_001100937.1 Gene:Zfp54 / 308232 RGDID:1307738 Length:586 Species:Rattus norvegicus


Alignment Length:569 Identity:166/569 - (29%)
Similarity:254/569 - (44%) Gaps:122/569 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 TFEEELIFISNSDFEELESE----------------IKIENFCSYGKDLEPVKGVPSKLKTCKSK 68
            ||.:..:..|..::|.|.|.                :.:||:|......:|||   ::.::|:..
  Rat    14 TFRDVAVDFSQEEWECLASPQRALYIDVMLENYSNLVSVENYCICDTVCQPVK---TERESCQCN 75

  Fly    69 IAKKR-------PLRKQTDT------FKCTQ----------------------------CQKTFT 92
            ...|.       .|.|::||      ::|.:                            |:|:|.
  Rat    76 ELGKMLHDPSHGGLYKRSDTTETSNNYRCCKDRDVSVDSSNPDQHKSTHTGEEPCTSEDCEKSFD 140

  Fly    93 ------------------RKENLESHL-------------------------------------R 102
                              |:|..:.|.                                     |
  Rat   141 LCSNITQDQTFYTEEKEHRQEKHDDHFSSTYSLMQQSIYIGANAGQCVKYGKCFSIASSLSIQQR 205

  Fly   103 LHAEERPFECSHCSKSFGRRTHYKRHLLKHEK-----RPHKCSHCSKTFTQNSSLKQHLHEHTGE 162
            :....:|::|:.|.|||.:.:..|.|...|::     :|:|||.|.|:|:..|:||.|...||||
  Rat   206 IDTGNKPYKCNICDKSFTQCSSLKTHRKTHQRLRAGTKPYKCSDCEKSFSYLSALKSHQKRHTGE 270

  Fly   163 RPFKCTQCSTSFARKSHLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCS 227
            :.:||.:|..|:|.::.|:.|.:.|:.:..:.|.||.|.|...||.:.|...|...:|:||:.|.
  Rat   271 KRYKCKECDKSYAYRTGLKRHQKIHTAKERYSCQHCGKVFHQLSHFKSHFTVHSAEKPYKCNECH 335

  Fly   228 KSFKLRSILQKHLLTHA-ERSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFKCPHCSETFARNSRL 291
            :||......::|...|: ::|.||.:|.|:|.....|:.|.|:|.||.|:||..|.::|.:.|.|
  Rat   336 RSFPHYVFFRRHKKNHSLQKSHKCKECGKSFFILSHLKTHYRIHTGEKPYKCTECDKSFTQYSHL 400

  Fly   292 QLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHTRERQYKCAECSKSFFKKSHLVEHQQVHTG 356
            :.|...:.||:..:|..|...|.|.|....|.::||..:.|||.:|...|...|.|..||:||||
  Rat   401 RRHQRIYTGKKLYRCEVCDKWFTMSSSLSRHQKIHTEAKTYKCKDCDIFFTHYSSLRRHQRVHTG 465

  Fly   357 ERPFKCTHCFKDFKCRTHLRVHMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHC 421
            |: ..|..|.|.|...:.||.|...|.|||..|||.|.|.|..:|||..|.:.|||:..:.|..|
  Rat   466 EK-HTCKQCGKSFTRGSTLRAHQRIHTGEKPYKCSKCDKSFIQASQLRTHQRVHTGERPYVCKEC 529

  Fly   422 SKSYTTSSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEK 470
            .||.||.:.|..|.:.||||.|:||..|.|.:.:.:..:.|.:.|||||
  Rat   530 GKSLTTCAILRAHQKIHTGEKPYKCMECGKSYIQYSHLKRHQKVHTGEK 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5245NP_650197.1 COG5048 74..478 CDD:227381 152/492 (31%)
C2H2 Zn finger 84..104 CDD:275368 8/102 (8%)
C2H2 Zn finger 112..132 CDD:275368 7/19 (37%)
C2H2 Zn finger 139..159 CDD:275368 9/19 (47%)
C2H2 Zn finger 167..187 CDD:275368 6/19 (32%)
C2H2 Zn finger 195..215 CDD:275368 8/19 (42%)
C2H2 Zn finger 223..243 CDD:275368 5/19 (26%)
C2H2 Zn finger 250..270 CDD:275368 7/19 (37%)
C2H2 Zn finger 278..298 CDD:275368 6/19 (32%)
C2H2 Zn finger 306..326 CDD:275368 6/19 (32%)
C2H2 Zn finger 334..354 CDD:275368 7/19 (37%)
C2H2 Zn finger 362..382 CDD:275368 7/19 (37%)
C2H2 Zn finger 390..410 CDD:275368 9/19 (47%)
C2H2 Zn finger 418..438 CDD:275368 8/19 (42%)
C2H2 Zn finger 446..466 CDD:275368 4/19 (21%)
C2H2 Zn finger 474..492 CDD:275368
Zfp54NP_001100937.1 KRAB 13..>53 CDD:214630 6/38 (16%)
C2H2 Zn finger 191..207 CDD:275368 1/15 (7%)
COG5048 210..546 CDD:227381 125/336 (37%)
C2H2 Zn finger 215..235 CDD:275368 7/19 (37%)
C2H2 Zn finger 247..267 CDD:275368 9/19 (47%)
C2H2 Zn finger 275..295 CDD:275368 6/19 (32%)
C2H2 Zn finger 303..323 CDD:275368 8/19 (42%)
C2H2 Zn finger 331..351 CDD:275368 5/19 (26%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 387..407 CDD:275368 6/19 (32%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 443..463 CDD:275368 7/19 (37%)
C2H2 Zn finger 470..490 CDD:275368 7/19 (37%)
C2H2 Zn finger 498..518 CDD:275368 9/19 (47%)
C2H2 Zn finger 526..546 CDD:275368 8/19 (42%)
zf-H2C2_2 539..563 CDD:463886 11/23 (48%)
C2H2 Zn finger 554..574 CDD:275368 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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