DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and phf3

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:XP_005157087.1 Gene:phf3 / 553518 ZFINID:ZDB-GENE-090313-207 Length:1691 Species:Danio rerio


Alignment Length:1887 Identity:403/1887 - (21%)
Similarity:657/1887 - (34%) Gaps:671/1887 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 DDDDAQSSDSAEEENADKAYDSEEMSEESDEFQESDND-----RDSDMDFDMRHSNRRNPNKRKR 390
            |:.:|:..||.:...:||   .......|.:|...:|:     ..:|.|.:|..:.         
Zfish    33 DEFEAKPEDSLKNMLSDK---DPMFGSASTQFHLLENEDFKLGSSADADHEMTGAG--------- 85

  Fly   391 VRKVVRQTPSKPMKPLPPPPTTPQHFPE--LKKRKEVLEPKAPQIGQIIQMPATKSVPAVFALGR 453
                |||:||           ..:|...  |:.|:        |.|| :|...|.|...|    |
Zfish    86 ----VRQSPS-----------DGEHNQSGFLQDRR--------QAGQ-MQRRQTASRGRV----R 122

  Fly   454 GLPSTSFLKIRPTHQSLPVKRPPLPTTPANSNVRRMPAVQLGRIVNSPQEVKEIIINKNMASPKG 518
            |      .::.|..::            |.|..|.....:.....|||.|.:|.::::..    |
Zfish   123 G------RRLGPARKA------------AESYNRESTCSEEHDRDNSPDEKREALLSRRF----G 165

  Fly   519 VFTNLNTLLGEDNNAATKSSPVPLRHRAVMSPSTPRSSYNQQMSPIVVPVPAQAH-------TPS 576
            |           :...:..:||.:..|..::.    ..|..::    :|.|:|:.       ..|
Zfish   166 V-----------HEVDSSMNPVVVLRRLTVTV----GGYKIEL----LPGPSQSFGSFSTSALQS 211

  Fly   577 KGFMP-------IGVDTAQSHKLPAQIV----------IETHQSSSELAAENDKQLDL---IN-S 620
            .||..       :|:|..|:.  ..|:|          :...||:|     :|..:|.   :| :
Zfish   212 LGFQDDGIIADGLGLDLGQNQ--DEQVVDNSTPEAVGEVSIDQSTS-----HDVPMDFGPYVNPN 269

  Fly   621 IVQDELLKSTLVEQP-VVNA-DEDIPKLVKMLESTAADLDPPPVSLPTNIFPAPEMQGVGNAAAA 683
            .|||  ..||:|.:| |.|| .||..|....:::.......|               |..|..||
Zfish   270 EVQD--TNSTMVLKPKVENATSEDAKKKNNQIKTQKLSAQKP---------------GNKNGTAA 317

  Fly   684 DPNNIMDTANEDEITADFLQHVVGLIEEDKQFEAEVVKQVLASTEPGTLDAIVSMP--------- 739
            .|                   .|..:.::||..:....:..:.|:||.|......|         
Zfish   318 RP-------------------AVKKLLKNKQSLSAAKNKPSSPTKPGLLQKESKHPQDKKIHTGQ 363

  Fly   740 -----------------TSIEPVDVPQVQ----AHT------------------------NLLPN 759
                             .::.|.|..::|    .|:                        .|.|.
Zfish   364 PEVHKGKPIKVGLKRPGAALGPKDGSKIQKIQDGHSASKTASPSGPLSPTITKKSSSESGPLSPT 428

  Fly   760 ASLTEPAQSMTSLPIACSTPSRSVAAST----PPTSAKVVRGYGRVIYLPPIEAPTTRAKRRAQF 820
            .|....:.|:...|.....||.||..|:    .|:|..|           |:....:|.......
Zfish   429 NSRKPSSDSVPLSPTNSRKPSNSVPLSSTNSRKPSSNSV-----------PLSPSNSRKPSSNLV 482

  Fly   821 PSAPGMAATSSSDAGNLSFGESSLDASINQPLN-TSSLSNDSQPGSG---------PKRP-NPRE 874
            |.:|..:...|||:|.||...|...:|.:.||: |:|....|:.|.|         ||:| ||  
Zfish   483 PLSPTNSRKLSSDSGPLSPTNSRKPSSDSVPLSPTNSRRPSSESGPGVKSVQSPHPPKKPQNP-- 545

  Fly   875 PSMARRSTAP------------RRSKKLDASQ---------------------NNDPDASESQED 906
            |:...::..|            .::||::.:|                     :|.|...:..|.
Zfish   546 PTSGNKTNPPVANSQGDEEQDKVKAKKIEKTQQRHKSRNSRSISIEEPQLFIPDNAPVVKKEAEG 610

  Fly   907 DD--------DPNKLWCICRQPHNNRFMICCDLCEDWFHGTCVGVTKAMGTDMENKGIDWKCPKC 963
            |.        ||.|...:|::|||||||:.|..|:|||||.|||:..|....||.:..::.|.||
Zfish   611 DALAESETVWDPTKNCVLCKKPHNNRFMVGCGRCDDWFHGDCVGLDLAKVQQMEKEDQEYVCLKC 675

  Fly   964 VKRQEERSQPRITDMLVTRPTTQPEQRPSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMR 1028
            ..:::|::|  .:::...:...:.:|||.::                         ||...    
Zfish   676 CAQEDEKTQ--ASELSDDKSAAKQKQRPQQS-------------------------LTAGG---- 709

  Fly  1029 IPMAKPAKKFPTGAISHQQQQQLNFIRLGPSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQ 1093
               .:|.:|                     ..|:|          ||:..|              
Zfish   710 ---IRPFRK---------------------DAGER----------RPSEDS-------------- 726

  Fly  1094 SAIQAHAATKGPLPQNAGAQSLLNNSFDAKKNKKKDLFEDVLRQADTVSKVERINVFERKSGRVI 1158
                   |.|||           |...:.||.|              :|.|.             
Zfish   727 -------AQKGP-----------NVKHETKKVK--------------ISPVS------------- 746

  Fly  1159 TGHMAPSAHQFRKWLQENPSFEVLPSGTVQSADAEKRLLKGAPEAATSTSEPAVLGVAKKPPEGP 1223
                                                                     :|||..| 
Zfish   747 ---------------------------------------------------------SKKPSTG- 753

  Fly  1224 AKLSHPQNTTVQASHQLGISSVRPLAKKDKEKTTPTVQAPTPNRIAAGKPEPVRIGIRRSLREQL 1288
                          |                                     :|..:|.||.|.|
Zfish   754 --------------H-------------------------------------IRRSVRDSLEEIL 767

  Fly  1289 LARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDRK 1353
            |.|.||:. .:.:|.:|.          :..:..|.|:|..| :.|.:|||.|||||.||:||.|
Zfish   768 LKRSKESD-LKISSDRPA----------EVARRTEKELFALF-QGVDSKYKNKYRSLTFNLKDAK 820

  Fly  1354 NRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLDMIKKSELDLLACAQNYVVK-T 1417
            |..||:::...:|.|..|||||.|:|||:|||.||:.||||.::||:|.:.::   .:..:.| |
Zfish   821 NNVLFKRVLKGEVSPADLVRMTAEELASKELAAWRKRENRHTIEMIEKEQREV---ERRPITKIT 882

  Fly  1418 HKGEEVIATKVDVTLPEENVSEASSMADTKQTSLVSEPSTSTLERSTSREKAGSSKEKRHKSHKH 1482
            ||||..|..:.....|     ||..:.......:|..|.....|......|........||||..
Zfish   883 HKGEIEIENQEPAKAP-----EAIEVEPEPVLKVVEVPEEKPPEIKVESPKKSIDTTNLHKSHLF 942

  Fly  1483 HHRKRSRSRSNSR---GRSVDKRHRRQHNEGGEQPGSGEREHRSREKQSRERDEIVPSPLPKKRD 1544
            .        .|.:   ||...                      ..|:.|.:..::..:.:.::..
Zfish   943 D--------LNCKICTGRMAP----------------------PTEEASTKVVKVATTVVRRQSS 977

  Fly  1545 ENDQSPVPKKTAEKKTEASAYNLVDQILESEKTVEQAANLGKPKPSPKPLPTLPSSLKAPE--PM 1607
            ..::|. |..|    |..||  |:|.:  :.:.:|:..           |..||.|.:|..  ..
Zfish   978 ATEESQ-PSTT----TPTSA--LMDDL--TLRAMEEGL-----------LNFLPESSRADSLCSK 1022

  Fly  1608 DNYSRYLHGLTTSSLWSGTLKMIDLADFEIVMYPVQGNCHQLGNLMPSQMDVIGRITRVNVWEYI 1672
            ::.:.:|..|  .|||.|.:.|..:|.|....|.|.|....|...:|..:.|.|||:...||:|:
Zfish  1023 EDTATFLSSL--ESLWGGYVDMPAVARFLTKSYLVSGTLDHLTQDLPDNIQVGGRISPQIVWDYV 1085

  Fly  1673 KKLKKSPTKEVVIVNIFPASPSETYKFDLFFEYLDSRQRLGVLGVDSDQIRDFYIFPLGSGDKLP 1737
            :|::.|.|||:.::...|.:..:...:.|.:.|..||:|.||:..:..|::|.|:.||||.:|:|
Zfish  1086 EKIRASGTKEICVIRFSPDTEEDEISYTLLYAYFSSRRRYGVVANNRKQVKDMYLIPLGSTEKIP 1150

  Fly  1738 PALQTAEPVPFYE---EAQRPNTLLGIIVRCLSKRPADAVPSTPSVPTPVPALSSKVAKRSRSSI 1799
            ..:     |||..   |..|||.|||:|:|...||....:     :|:.|....|.:|: |:..:
Zfish  1151 HQI-----VPFDGPGLETNRPNLLLGLIIRQRPKRDFGVI-----LPSDVSEAPSFLAE-SKPQV 1204

  Fly  1800 SYPAQSSP------KRKISTHSTSSKDDEFD-IDAIIKAPIAKLQ-------KTAPKVVPQP--- 1847
            .|| |.:|      :..||....:.|.|..| |.::::.||...:       :..|.|:..|   
Zfish  1205 DYP-QKTPVALDTEQSFISDLGNARKKDTTDLIKSVVEEPILDTETDENVSLRFLPGVLKLPEKA 1268

  Fly  1848 -----------SVPNDADEPYSPGGSDDELVP----SAPQRPNDLERQV--NEINKQIAAQQMEI 1895
                       |...:|..|....|::..:.|    |||:    |:|.|  .:..|.:..:|..:
Zfish  1269 ASCSNDNMKSDSTKTEAKTPSVDSGNNATVSPKPIASAPR----LDRFVIKKKEPKAVKTEQAPV 1329

  Fly  1896 AGLLKVEPTGSASSSNVLAAISIPANLS--KILASI-----KDKTNLPSSADDGDEEYN------ 1947
            :..|::. :....::.||:....||::|  ..|:|:     |:::...|:|....:|.:      
Zfish  1330 SVSLEIS-SEKKETAVVLSLSDKPADVSTESFLSSLTNTKPKEESESCSTASPTSQETSQTTSSG 1393

  Fly  1948 -PEDDITATSSFASK-----KPRSKGRLAHLSEAELLSMVPDNLAGVIPRSSRTRHQLAQSPLTP 2006
             .:|.:...||.|.|     .|.:..:::.....:..|..|:.....:|.||..:   .:..:||
Zfish  1394 TSKDSVDEGSSSAPKNETISSPTATTKVSPAGILKRASSAPEPTESKLPESSSEK---PEQKVTP 1455

  Fly  2007 TP 2008
            .|
Zfish  1456 QP 1457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 56/189 (30%)
PHD_PHF3_like 914..963 CDD:277027 22/48 (46%)
BRK 1142..1186 CDD:197800 2/43 (5%)
TFIIS_M 1274..1396 CDD:284835 53/121 (44%)
SPOC 1623..1729 CDD:285043 33/105 (31%)
phf3XP_005157087.1 DUF4045 <341..732 CDD:330572 100/500 (20%)
PHD_PHF3 625..675 CDD:277108 22/49 (45%)
TFIIS_M 755..863 CDD:311443 53/119 (45%)
SPOC 1027..1176 CDD:311609 54/155 (35%)
Endomucin 1271..>1449 CDD:330316 36/185 (19%)
RRM 1605..>1690 CDD:330708
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7009
eggNOG 1 0.900 - - E1_KOG1634
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 180 1.000 Inparanoid score I3988
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25216
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11477
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 1 1.000 - - X6674
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.080

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