DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and dido1

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_001073424.1 Gene:dido1 / 553277 ZFINID:ZDB-GENE-030131-6117 Length:530 Species:Danio rerio


Alignment Length:566 Identity:129/566 - (22%)
Similarity:196/566 - (34%) Gaps:205/566 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   783 VAASTPPTSAKVVRGYGRVI--------YL----------------------PPIEAPT------ 811
            :||.||.:....||..||..        :|                      ||.:.||      
Zfish     1 MAAETPESKGAPVRRSGRQAKRTDKLEEFLVTVKRGRGAGRRSCPSRIEGGDPPSQTPTDAETAS 65

  Fly   812 -----------------------TRAKRRAQFPSAPGMAATSSSDAGNLSFGE------------ 841
                                   .|.:.||:.|..|.....|.||.|:....|            
Zfish    66 EASFDGNAEAKIEEQKVASPEKKKRGRGRAKRPVKPKTGGGSVSDDGSSENEEETGEEVAKDTQE 130

  Fly   842 -----------SSLDASINQP----------LNTSSLSNDSQPGSGPKRPNPREPSMARRSTAP- 884
                       .:::|...||          |...|.:::........|...|....::|.|.| 
Zfish   131 HVETVACAEDAKNVEAKEEQPMDVVTKEEEVLEEGSKNDEKSLNESVNRRLTRACKDSKRDTKPK 195

  Fly   885 -----RRSKKLDASQNNDPD-----------ASESQEDDDDPNKLWCICRQPHNNRFMICCDLCE 933
                 |:.||.:...::|.|           ||||..|..|||.|:|||||.||.|||||||.||
Zfish   196 VGVKLRKEKKEEKDDDDDDDDDDDDNDESSSASESDSDGYDPNALYCICRQKHNKRFMICCDRCE 260

  Fly   934 DWFHGTCVGVTKAMGTDMENKGIDWKCPKCVKRQEERSQ-----------------PRITDMLVT 981
            :||||.|||:.:|.|..||..|.|:.||.|..::.:.|:                 ||.|:..:|
Zfish   261 EWFHGDCVGIPEARGRLMERNGEDYVCPNCYTQKGQISKASSSTAAAENGKRPIVGPRKTESGLT 325

  Fly   982 RPTT----QPEQRPSETKVLTTTAEIVQVAAPSAPRRT---LPVVLTVASSPMRIPMAKPAKKFP 1039
            .|::    ..|::..:   |.....|.:...||..::.   .||.....||   :|..       
Zfish   326 APSSTAAAAAEEKADD---LGIKGRIEKATNPSGKKKIKIFQPVPAAEGSS---LPKC------- 377

  Fly  1040 TGAISHQQQQQLNFIRLGPSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQSAIQAHAATKG 1104
                            :||.            |:|.|...|||||.:||.::|.:|::....   
Zfish   378 ----------------IGPG------------CERDALPDSVYCGNDCILRHAAAAMKTITT--- 411

  Fly  1105 PLPQNAGAQSLLNNSFDAKKNKKKDLFEDVLRQADT-VSKVERINVFERKS----GRVITGHMAP 1164
                            |.|.:|:|:..:...::..| .|..::.:..||:|    |:.......|
Zfish   412 ----------------DGKDSKQKEKSKSKAQKKTTNKSPQKKSSGPERRSSSNQGQEEESASLP 460

  Fly  1165 SAHQ--FRKWLQENPSFEVLPSGTVQSADAEKRLLKGAPEAATSTS 1208
            ..::  ..|..:|:|     |...:.|..::...:...||..|:.|
Zfish   461 EENEDDEDKHAEEHP-----PPPAMSSWSSDHNYIAVTPEKTTAIS 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 61/187 (33%)
PHD_PHF3_like 914..963 CDD:277027 31/48 (65%)
BRK 1142..1186 CDD:197800 10/49 (20%)
TFIIS_M 1274..1396 CDD:284835
SPOC 1623..1729 CDD:285043
dido1NP_001073424.1 PHD_DIDO1_like 237..290 CDD:277109 34/52 (65%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7009
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 180 1.000 Inparanoid score I3988
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007937
OrthoInspector 1 1.000 - - otm25216
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11477
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.150

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